Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0260 ATGATGTCTAACACTGACAGCAATTGTTGTAAACCACCCCGGAGCGGTGAGAAACGCATTCCGGCACCACCGCCTTTGCCCCGTTTTACAGCAATTGGTTGTCCTTGTGACTGCCTGGTGACGAATCAGTATTCAGCACAGAAAGGGTCAGCAACAAGAGATTTGTGGGAGCGTCTCTTTGATGCAGGTTACAGAGCAGATGTTTGCATTAATACTGAAAATGGTGGCATTGTTTATGCTCACTCTAACATTCTTGGCATGACTTCTCCCGTTATCAGAGGCATGCTGAAGCAAGCAAAACGTCACAATCGATGGCGATCAATCTCAATCTTTGGTGTTCCTCATGACGTGGTTCGAGTTTTCATTCGATTCCTGTACTCTTCTCGTTTGGAGAAAGAAGAAATGGAGGAATACATCCTACATTTGCTGGTGCTGTCACATGTATACATGGTCCCAGACTTGAAGCGTGAGTGCGAACAGAAGCTAGAATTGGGATTACTCACTATAGATAATTTAGTTGATGTATTTCAACTTGCATTACTGTGTGATGCTCCACGGCTCAGCCTCATTTGTCACCGTAAGATACTAAAGAACTTCAAAGCTGTTTCTGTGTCCGAAGGATGGAAAGCAATGAAGCAGAGCCACCCTATTCTAGAAAAGGAAATTCTGGAGTCAGTGATTGACGAGGAAAATAGCAAAAAGGAGAGGATAAGAAAAATCAATGAAAGAGAGATATATCTGCAACTATACGATGCGATGGAAGCGCTTGTTCACATATGTAGAGATGGTTGTCGAACTATTGGCCCTCATGATAAGGACTTCAAAGCAAACCAACCATGTAGGTATGCCGCCTGCAAGGCATTGGAGTTGCTTGTTCGACATTTTGCTGGCTGCAAGTTGAGAGTCCCAGGGGGTTGTGTTCATTGCAAGAGGATGTGGCAACTATTGGAGCTACACTCTAGACTATGTGCTGATCCTGATTTTTGTAGAGTTCCGTTATGCAGGAACTTTAAGCAGCGAGTGTCAAAACAAAGCAAGAAAGAAGAAATCAGATGGAAAATATTGGTTGAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCACCATGCTTTAGGCCACAATGA 1125 0.4347 MMSNTDSNCCKPPRSGEKRIPAPPPLPRFTAIGCPCDCLVTNQYSAQKGSATRDLWERLFDAGYRADVCINTENGGIVYAHSNILGMTSPVIRGMLKQAKRHNRWRSISIFGVPHDVVRVFIRFLYSSRLEKEEMEEYILHLLVLSHVYMVPDLKRECEQKLELGLLTIDNLVDVFQLALLCDAPRLSLICHRKILKNFKAVSVSEGWKAMKQSHPILEKEILESVIDEENSKKERIRKINEREIYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQPCRYAACKALELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADPDFCRVPLCRNFKQRVSKQSKKEEIRWKILVEKILRTRGIGIAPCFRPQ* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0260 374 ProSiteProfiles BTB domain profile. 66 134 IPR000210 GO:0005515
Lja2g0260 374 SMART TAZ_2 243 335 IPR000197 -
Lja2g0260 374 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 11 372 IPR044513 -
Lja2g0260 374 SUPERFAMILY TAZ domain 243 343 IPR035898 -
Lja2g0260 374 Coils Coil 223 243 - -
Lja2g0260 374 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g0260 374 Pfam BTB/POZ domain 59 162 IPR000210 GO:0005515
Lja2g0260 374 CDD BACK 168 225 - -
Lja2g0260 374 Gene3D TAZ domain 241 362 IPR035898 -
Lja2g0260 374 Gene3D - 167 240 - -
Lja2g0260 374 SMART BTB_4 66 166 IPR000210 GO:0005515
Lja2g0260 374 Pfam TAZ zinc finger 251 334 IPR000197 -
Lja2g0260 374 Gene3D Potassium Channel Kv1.1; Chain A 40 166 IPR011333 -
Lja2g0260 374 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 11 372 - -
Lja2g0260 374 SUPERFAMILY POZ domain 50 162 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0260 Lja-Chr2 2371673 2378416 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lja2g0260 BTB 3.3e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0260 - - lja:Lj2g3v1968190.1 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0260 2 2371673 2378416 Lja2g0260 2 2371673 2378416 ECH