Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0258 ATGGGGGGCTCTGGCAATTCTTTTTCTTTGTCCAGTCTCATGTGTGAAGAAGTTGAAGCTACCTTCTTTGAAGATGAAGAAAACACTTGCATTGACTCAATTGAAAACCCATGTTTCGTTTTGGAGGATGATGATGATGAGGAATATATTGAGTACTTGTTCAGACAAGAAACGGGGCTTGGGATTGGATCCCAGATTCATTTCTTGTCTTGTGATGATGATCACTCAGAAAGATGCTGGATGATGAGTGCTCGTTTGGATGCCATTGATTGGATTTTCAATACACAAGCCAGATTTGGATTCTGTGTTCAGACAGCTTATTTATCAGTCACTTATTTTGATCGGTTTCTTTCCAAGAGAAGCATTGATGAATCAAAACCTTGGGCTATTCAATTGTTATCAGTGGCATGTTTATCACTGGCTGCAAAGATGGAAGAGCAAAGGGTGCCTCCTCTGTCTGAATATCCAATACAAGGATATTGTTTTGAGAACAAAGTTATTAAGAACATGGAGCTTCTGATTTTGAGTACCTTGGAATGGAGAATGGGATTAGCAACTCCTTTTGCTTATTTGCATTACTTTGTTAGCAAGTTCTTCCCTGGATCCAGACCAGAAACAATAATCACAAAAGCCACAGAACACATTGTGACCATGGTCAGAGATGTTAATTTGATGGACCAAAGGCCATCTATAATTGCCTCTGCTTCCATATTGGCTGCTTTTGATGCTACATTAACAAAAAAGGCTATTGATCTTCGCATTAGCCTAATCTCATCATGGGGAAATATAGAAAGTGAACATGTATTTTCCTGTTACAATCTTATACAGGAAAAGACTAGAGACAAAGTTAAGACACCTTCCTCAACTTTATTGTCAAGCTCCACGTGTGTTCTTGAGAACCAATCTAATACTTCAACAGGAATTAAGAGAAAGCTTTGTTATGAGGACAGTGAAAATTGTTCTGAACCAAAGCTACTTCGGCCTTAG 987 0.387 MGGSGNSFSLSSLMCEEVEATFFEDEENTCIDSIENPCFVLEDDDDEEYIEYLFRQETGLGIGSQIHFLSCDDDHSERCWMMSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQRVPPLSEYPIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFPGSRPETIITKATEHIVTMVRDVNLMDQRPSIIASASILAAFDATLTKKAIDLRISLISSWGNIESEHVFSCYNLIQEKTRDKVKTPSSTLLSSSTCVLENQSNTSTGIKRKLCYEDSENCSEPKLLRP* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0258 328 Pfam Cyclin, N-terminal domain 82 182 IPR006671 -
Lja2g0258 328 CDD CYCLIN 85 175 IPR013763 -
Lja2g0258 328 Gene3D - 184 273 - -
Lja2g0258 328 PANTHER CYCLIN-D5-1 49 312 - -
Lja2g0258 328 PANTHER CYCLINS 49 312 IPR039361 -
Lja2g0258 328 SMART cyclin_7 90 176 IPR013763 -
Lja2g0258 328 SUPERFAMILY Cyclin-like 43 182 IPR036915 -
Lja2g0258 328 Pfam Cyclin, C-terminal domain 186 283 IPR004367 -
Lja2g0258 328 Gene3D - 80 183 - -
Lja2g0258 328 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0258 Lja-Chr2 2356292 2358503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0258 1 265 Core Cell Cycle Gene Families AT4G37630 35.507 1.22e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0258 K18811 - gmx:100798140 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0258 2 2356292 2358503 Lja2g0258 2 2356292 2358503 ECH