Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0255 ATGATGGAGAGTTATTTGAATGAGAATTTCGGAGGAGTCAAATCCAAGAACTCCTCTCAGGAAGCACTTCAGAGATGGAGGAAGCTCTGTGGGGTTGTGAAAAACCCCAAAAGGCGATTTCGTTTCACTGCAAATCTCAACAAGAGGACCGAAGCTGCTGCTATGCGTCGATCCAATCAGGAGAAGCTGAGGGTTGCAGTTTTGGTTTCCAAAGCAGCGTTGCAATTTATCCAAGGCTCACAACCAAGCGAATACAAAGTGCCGGAGGATGTCAAAGCTGCAGGATTTCAAATCTGTGGTGATGAATTGGGGTCTATAGTTGAAAACCATGATGTAAAGAAGTTCAAATTCCATGGTGGGGTTAATGGCGTTGCAAAAAAGCTTTCTACATCAGTCACTGAGGGGATTAGTAGTGATGCTGATATACTGAACAGGAGACAGCTGATATATGGAATCAATAAGTTTACTGAAATCGAAGCTAAGAGTTTTTGGGTTTTTGTCTGGGAAGCACTTCAAGACATGACTCTGATGATACTTGGAGTGTGTGCTTTAGTGTCTCTGATAGTTGGCATTGCAACTGAAGGATGGCCCAAAGGGTCTCATGATGGTCTTGGCATTGTTGCAAGTATTTTACTGGTTGTCTTTGTTACAGCAACAAGTGATTATCGCCAATCGTTACAATTCAAGGATTTAGACAAGGAGAAGAAGAAAATTTCCATTCAGGTCACCAGAAATGCATATAGGCAGAAAATGTCAATATATGAATTACTTCCTGGTGATATTGTGCACCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACAGGAGAGAGTGAACCAGTGGTGGTGAATTCGGAAAATCCATTTCTTCTCTCTGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGATTACAACTGTTGGAATGAGGACTCAATGGGGCAAGTTGATGGCTACTCTCACTGAAGGCGGGGATGATGAAACCCCATTACAGGTGAAATTGAATGGAGTGGCAACCATTATTGGGAAGATAGGCCTATTCTTTGCAATTGTTACTTTTGCAGTTCTGGTGCAAGGACTTGTGAGCCATAAACTCCAACAAGATAGCTTTTGGAGCTGGACTGGGGATGACGCGTTGGAGATGTTGGAGTACTTTGCGATTGCAGTTACCATCGTTGTTGTAGCTGTTCCAGAAGGGTTGCCATTAGCTGTGACTCTGAGCCTTGCATTTGCTATGAAGAAGATGATGAATGACAAAGCCCTCGTCCGACATTTGGCAGCTTGTGAGACCATGGGATCAGCCACAACTATATGCAGTGACAAGACTGGAACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGCATGAATAGCCAGGAAGTGAGCAATAAGCCTTCTAGTTTGTGCTCTGAACTCCCTGAATCTGTTGTGAAGCTTCTGCAACAGTCAATATTTAATAACACAGGAGGAGAAGTTGTGATTAACAAAGATGGGAAACGAGAGATTTTAGGGACTCCAACCGAGACTGCAATATTGGAGTTTGGCTTGTCATTAGGGGGTGATTTTCAAGGAGAGAGACAAGCATGTAACCTTGTGAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGAGTGTAGCGGTGGAGCTTCCTGGTGGAGGTTTACGAGCTCACTGTAAAGGAGCTTCTGAAATAGTTCTGGCTGCATGTGACAAAGTGCTCAACTCAAACGGTGAGGTTGTCCCCCTTGATGAAGAATCAATTAACCATCTTAACTCTACAATTAACCAGTTTGCTAGTGAGGCACTTAGAACTCTATGCCTTGCCTATATGGAGTTGGAAAATGGGTTCTCTGCTGAAGACCCCATTCCTCTTTCTGGATTCACTTGCATTGGAGTTGTTGGCATCAAAGATCCTGTTCGTCCCGGTGTTAAGGAGTCTGTAGCAGTGTGTCGTTCAGCTGGAATAACAGTAAGAATGGTTACAGGTGACAATATTAATACCGCAAAGGCTATAGCTAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGAGTTTAGAGAGAAGAGTCTGGAAGAGTTGCTTGAACTGATCCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTGAAGCACTTGCGTACCACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCCCTGCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATATTGGATGATAACTTCTCCACAATAGTAACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTCGTGCAGTTCCAGCTGACAGTTAATGTGGTTGCACTGATAGTGAACTTCACATCAGCCTGCTTAACAGGAACTGCACCTCTCACAGCTGTTCAACTTTTATGGGTTAACATGATAATGGACACCCTGGGAGCACTTGCTCTTGCAACTGAACCTCCAAAAGATGATTTAATGAAGCGTTCACCTGTTGGAAGGAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTAGGACAATCCCTGTATCAGTTTACGGTGATATGGTTTCTTCAGGCAAAAGGAAAATCATTCTTTGCACTTAGTGGCCCTGATTCGGATCTGGTCTTAAACACACTTATTTTCAACACATTTGTATTCTGTCAGGTTTTCAATGAGATAAACTCACGTGAGATGGAGAAAATTAATGTTCTCAAAGGAATATTGGAAAACTACGTTTTCGTGGCTGTCCTCAGTGCTACTGCTTTATTCCAGATCATAATAGTTGAATACATGGGAACCTTTGCAAACACAACACCTCTCACTCTGGTACAGTGGTTCTTTTGTTTAGTTGTTGGATTTTTGGGTATGCCTATTGCTGCTGGCATAAAGATGATCCCTGTCTGA 3048 0.4268 MMESYLNENFGGVKSKNSSQEALQRWRKLCGVVKNPKRRFRFTANLNKRTEAAAMRRSNQEKLRVAVLVSKAALQFIQGSQPSEYKVPEDVKAAGFQICGDELGSIVENHDVKKFKFHGGVNGVAKKLSTSVTEGISSDADILNRRQLIYGINKFTEIEAKSFWVFVWEALQDMTLMILGVCALVSLIVGIATEGWPKGSHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNAYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVVVNSENPFLLSGTKVQDGSCKMLITTVGMRTQWGKLMATLTEGGDDETPLQVKLNGVATIIGKIGLFFAIVTFAVLVQGLVSHKLQQDSFWSWTGDDALEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNSQEVSNKPSSLCSELPESVVKLLQQSIFNNTGGEVVINKDGKREILGTPTETAILEFGLSLGGDFQGERQACNLVKVEPFNSTKKRMSVAVELPGGGLRAHCKGASEIVLAACDKVLNSNGEVVPLDEESINHLNSTINQFASEALRTLCLAYMELENGFSAEDPIPLSGFTCIGVVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSLEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPKDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFTVIWFLQAKGKSFFALSGPDSDLVLNTLIFNTFVFCQVFNEINSREMEKINVLKGILENYVFVAVLSATALFQIIIVEYMGTFANTTPLTLVQWFFCLVVGFLGMPIAAGIKMIPV* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0255 1015 Pfam E1-E2 ATPase 238 432 - -
Lja2g0255 1015 Pfam Cation transporting ATPase, C-terminus 839 1013 IPR006068 -
Lja2g0255 1015 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Lja2g0255 1015 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Lja2g0255 1015 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Lja2g0255 1015 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Lja2g0255 1015 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Lja2g0255 1015 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Lja2g0255 1015 PANTHER CATION TRANSPORTING ATPASE 3 1014 - -
Lja2g0255 1015 Gene3D - 464 658 IPR023299 GO:0000166
Lja2g0255 1015 SUPERFAMILY Calcium ATPase, transduction domain A 240 334 IPR008250 -
Lja2g0255 1015 Gene3D - 169 1005 - -
Lja2g0255 1015 Gene3D - 451 799 IPR023214 -
Lja2g0255 1015 CDD P-type_ATPase_Ca_PMCA-like 143 887 - -
Lja2g0255 1015 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 51 IPR024750 GO:0005516
Lja2g0255 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 387 482 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja2g0255 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 725 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja2g0255 1015 Pfam Cation transporter/ATPase, N-terminus 118 186 IPR004014 -
Lja2g0255 1015 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja2g0255 1015 SFLD Haloacid Dehalogenase 436 806 - -
Lja2g0255 1015 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 663 IPR023299 GO:0000166
Lja2g0255 1015 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1014 - -
Lja2g0255 1015 Gene3D - 143 337 - -
Lja2g0255 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Lja2g0255 1015 SFLD p-type atpase 436 806 IPR044492 -
Lja2g0255 1015 SMART Cation_ATPase_N_a_2 116 191 IPR004014 -
Lja2g0255 1015 SUPERFAMILY HAD-like 452 859 IPR036412 -
Lja2g0255 1015 Gene3D - 18 78 - -
Lja2g0255 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
Lja2g0255 1015 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja2g0255 1015 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja2g0255 1015 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja2g0255 1015 Pfam Cation transport ATPase (P-type) 514 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0255 Lja-Chr2 2337725 2343284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0255 2 1015 Primary Pumps ATPases AT4G37640 83.054 0.0 1738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0255 K01537 - gmx:100792691 1810.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0255 2 2337725 2343284 Lja2g0255 2 2337725 2343284 ECH
Lja2g0255 2 2337725 2343284 Lja4g3435 4 64995243 65004498 PCT