Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0249 ATGGGGAAGAAGCAGCACAGCAAAGACAGAATGTTCATCACGAAAACCGAGTGGGCAACGGAATGGGGAGGCTTCAAATCCAAAGACAACCGCACCGTCTTCAAGCGTCTTCCATTCTATTGCTGCGCCCTTACATTCACGCCGTTTGAGTATCCCGTTTGTACACCTGATGGCAGTGTTTTCGATGTTATGAACATCACTCCTTATGTTATCAAATATGGTAAACATCCTGTTACCGGAACTCCGTTGAAGCAGCAGGATCTCATTCCACTCAATTTCCACAAGAATTCAGAAGGAGAATTTCAGTGTCCTGTGCTAAATAAAGTTTTCACTGAATTTACACATATTGTGGCGGTGAAGACAACAGGAAATGTGTTCTGCTATGAGGCCGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTTCTCACTGATGAACCATTCACTAGGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAACACAATCTGAAAATTGACGATGAAGAACTACAGAAAATGAGTTCGGATCCAACATATAATATAAACATGTCTGGTGATCTCAAGCAAATGTTTCAGGAGATTGGAACTGAGAAAGGAAAAGAAACCGCGATGCATGGAGGAGGTGGTGGCAAGGCACGGAAATTAAGGGCTGATGCACTTGCTGCCGTCATAGCTGCACGGTCACGTCTTAAAGAGGATTCCAAATCAAATCCAAATGAAGAAGCCAAAGCTCCTCAGGCGTTTAGTATTGTGGATGCTGCATCTGCCTCAGTACATGGAAGAAGTGCAGATGCTGCTAAAGCCTCATCAAGTGATAAAACTGCAGCTAGAATAGCTATGCACAAGGCTGGTGACAGGGCACCGGTGAATGCAAAGCTGGTAAAAAGCCGTTACACTACTGGTGCTGCTTCCCGGTCATTTACTTCAACATCTTTTGATCCAGTTACAAAAAATGAATTTGAATATGTCAAAGTGGAGAAGAACCCAAAGAAGAAGGGATATGTGCAACTGCATACAACACATGGTGAATTGAACATTGAGCTGCATTGTGATATCGCGCCCAGGGCATGTGAGAACTTTATCACACTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGCGGTGATCCTACTGGCACTGGTAAAGGAGGTGAATCAATATGGGGAAAGCCTTTTAAAGATGAACTTAATTCCAAATTGGTTCACTCTGGAAGGGGTGTTGTCAGCATGGCAAACAGCGGGCCACACACTAATGGTTCCCAGTTTTTTATCTTGTACAAGTCTGCGCCTCATCTAAACTTTAAACATACCGTTTTTGGAGGAGTTGTTGGAGGCCTGACTACATTAGCAGCAATGGAAAAGGTTCCTGTGGATGATGATGACCGACCTCTGGACGAAATCAAGATAACAAATGTCACGATTTTTGTCAACCCTTACACTGAACCGGACGAGGAAGACGAAAAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATGATAAGATTGGCTCATGGTATAGCAATCCCGGTGCTGGTATATCTGAATCTGGAAGTAAGGGGGTTGGCGGTGGCGTTGGCAAGTACTTGAAAGCTAGGAGTGCTCAAGCTGAATCTGCTAATGTTGACACCGGTACAGCCGTTGGAAAGAAAGGTACAGCCGTTGGAAAGAAAAGAAAAGCAGTTGTCAGTAGTGAATTTAACGATTTTTCTGCTTGGTAA 1806 0.4286 MGKKQHSKDRMFITKTEWATEWGGFKSKDNRTVFKRLPFYCCALTFTPFEYPVCTPDGSVFDVMNITPYVIKYGKHPVTGTPLKQQDLIPLNFHKNSEGEFQCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTRDDLITIQNPNALDSKVLLDFDHVKHNLKIDDEELQKMSSDPTYNINMSGDLKQMFQEIGTEKGKETAMHGGGGGKARKLRADALAAVIAARSRLKEDSKSNPNEEAKAPQAFSIVDAASASVHGRSADAAKASSSDKTAARIAMHKAGDRAPVNAKLVKSRYTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGELNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGKGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGGVVGGLTTLAAMEKVPVDDDDRPLDEIKITNVTIFVNPYTEPDEEDEKDNAKEKNAEDEDNDKIGSWYSNPGAGISESGSKGVGGGVGKYLKARSAQAESANVDTGTAVGKKGTAVGKKRKAVVSSEFNDFSAW* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0249 601 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 599 IPR044666 -
Lja2g0249 601 SUPERFAMILY Cyclophilin-like 350 509 IPR029000 -
Lja2g0249 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Lja2g0249 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Lja2g0249 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Lja2g0249 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Lja2g0249 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Lja2g0249 601 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Lja2g0249 601 MobiDBLite consensus disorder prediction 503 584 - -
Lja2g0249 601 CDD cyclophilin_RING 350 508 - -
Lja2g0249 601 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Lja2g0249 601 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Lja2g0249 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Lja2g0249 601 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Lja2g0249 601 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 599 - -
Lja2g0249 601 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Lja2g0249 601 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Lja2g0249 601 SUPERFAMILY RING/U-box 37 104 - -
Lja2g0249 601 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Lja2g0249 601 MobiDBLite consensus disorder prediction 512 531 - -
Lja2g0249 601 Gene3D - 331 515 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0249 Lja-Chr2 2294195 2298238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0249 1 601 U-box Gene Family AT5G67530 75.041 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0249 K10598 - gmx:100819923 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0249 2 2294195 2298238 Lja2g0249 2 2294195 2298238 ECH