Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0247 ATGGATACCTTGTTTAGGCTCGTCAGTTTCCAACAACAACAACCTGATCAATCCTTCAACTCCACCACCAGCAGAACAACAACATCAAGCAGCTCCAGATCCTCCAGACAGAACAACTATCACCACTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTTTCCTCTTCTTCCTCTAGACAACAACAACAACAACAACACTATTATCCTAACTATCAGCCCCACTTTTCCACTAACACCACCCCCACACCACCCCCCACCACCACTGACTTCAACTTCGAATTCTCCGGCAAGTGGGCCCACGACATCCTTCTCGAAACCGCGCGTGCCGTTGCTGACAAAAACACCACCCGCGTCCAGCAACTTCTCTGGACGCTCAACGAGCTCAGCTCCCCTTACGGCGACACTGAACAAAAACTCGCCGCGTATTTCCTCCAAGCCTTCTTCAGCCGCATCACCGACGCCGGAGACCGCACCTACCGGACACTCACCACCGCGTCGGAAAAAACCTGCTCCTTCGAATCAACACGCAAAACCGTCCTGAAATTCCAAGAGGTCAGCCCCTGGACAACCTTCGGCCACGTCGCTTGCAATGGCGCCATCTTAGAAGCCTTCGAAGGGGAATCGAACCTCCACATCGTCGACATCAGCAACACCTATTGCACTCAATGGCCTACTCTCTTCGAAGCACTCGCCACCCGCGCCGACGACACGCCGCACCTCCGTCTCACCTCCGTCGTCGCCACCGGCGGCTCCGTCCAGCGTGTGATGAAGGAAATCGGCGCCAGGATGGAGAAATTTGCTCGACTCATGGGCGTTCCGTTCAAATTCAACGTCGTCCACCACGCCGGCGATCTCTCCGAACTCAACCTCTCCGATCTAGACATCAAAGACGATGAAGCCTTGGCAATCAACTGCGTCAATTCCCTGCATTCGGTAACCGCAATCGGTAACCGTCGCGACGCGTTGATATCTTCCCTGAGGCGGTTGCGGCCGAGGATTGTGACGGTGGTGGAGGAGGAAGCAGATTTGGATATCGGATTCGAAGGATTTGAATTCGTGAAGGGATTTGAAGAATGCTTGAGGTGGTTTAGGGTTTATTTCGAGGCATTGGATGAGAGTTTTCCGAGGACGAGTAACGAGCGTTTGATGCTGGAACGGGCGGCGGGGAGGGCGATCGTTGATGTTGTGGCGTGTTCGGCGGCGGAATCGAGGGAGAGGAGGGAGACGGCGGCGAAGTGGACGCGGCGTATGCATGGAGCGGGGATGAATACGGCGGCGTTTAGTGAGGAGGTTTGTGATGATGTGAGGGCGTTGTTGAGAAGGTATAAGGAAGGGTGGTCGATGACACAGTGCTCCGATGGAGGGATATTGTTGACGTGGAAGGAGCAGGCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1443 0.5447 MDTLFRLVSFQQQQPDQSFNSTTSRTTTSSSSRSSRQNNYHHYPQEDEECFNFFMDEEDLSSSSSRQQQQQQHYYPNYQPHFSTNTTPTPPPTTTDFNFEFSGKWAHDILLETARAVADKNTTRVQQLLWTLNELSSPYGDTEQKLAAYFLQAFFSRITDAGDRTYRTLTTASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEAFEGESNLHIVDISNTYCTQWPTLFEALATRADDTPHLRLTSVVATGGSVQRVMKEIGARMEKFARLMGVPFKFNVVHHAGDLSELNLSDLDIKDDEALAINCVNSLHSVTAIGNRRDALISSLRRLRPRIVTVVEEEADLDIGFEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERAAGRAIVDVVACSAAESRERRETAAKWTRRMHGAGMNTAAFSEEVCDDVRALLRRYKEGWSMTQCSDGGILLTWKEQAVVWASAWRP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0247 480 MobiDBLite consensus disorder prediction 1 40 - -
Lja2g0247 480 Pfam GRAS domain family 108 479 IPR005202 -
Lja2g0247 480 ProSiteProfiles GRAS family profile. 97 479 IPR005202 -
Lja2g0247 480 PANTHER PROTEIN SHORT-ROOT 1 479 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Lja2g0247 480 MobiDBLite consensus disorder prediction 61 94 - -
Lja2g0247 480 MobiDBLite consensus disorder prediction 1 39 - -
Lja2g0247 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0247 Lja-Chr2 2283972 2286055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0247 1 480 GRAS Transcription Factor Family AT4G37650 61.423 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja2g0247 GRAS 6.9e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0247 - - gmx:100820459 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0247 2 2283972 2286055 Lja2g0247 2 2283972 2286055 ECH
Lja2g0247 2 2283972 2286055 Lja4g3440 4 65055922 65057666 PCT