Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0242 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACCATACTTACAGACCCAGAGTACAGTGCTGTTTTGCGCATGCGTTCTAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAAGCAAAGCTTGCAAAGAACCTACCAGCCCCCAAACTTGTGAATAACCACACAGCTTTGAGTACCATAGTTCAACATGAAGATGATGCGAATACCAAGCCTCTTGCAGTTTCTGGTGGAACAACTCCTAATTCTAAAGAGCAAATATCAAGGTTGGATAATCTTATATTAGATTCTATCATCAGGTTGAAGGAGCCCAAGGGTTCTGACCGAGCTGCCATTGCTGCTTATATAGAGGATCAATACTGGTCTCCGTCGAACCTCAGAACGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAATTAAGATAAAGCATAAGTACAGGATTGCAACAAATTCAACTATATCTGAGAAACAAAGATGCTCTTCCTTGTTGCTTTTGGATGGGAGGCCCAAAGATTCCCCAAAAGCAGAGAAGTCTAATAATATCCTTTCAAAATCCCAAATTGATGCAGAGATATCAAAAGCAAGGGGCGTGGTGGCAGCTCAAGAAGCAGCAGCAGCTGCAGCAAAAGCAGTTGCAGAGGCAGAAGCTGCGATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGCAGGCCCGAGTGTTTGCAAAAGCACTAACGAAGGCACTAAAATGCAGAACGCTTCATATTTGCTCTATTCCATCACCATCATTTCCTAATGCACCTATCCAATTGTTCCAGAACTACTCGTGA 930 0.4495 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEYSAVLRMRSNVDLKDKWRNINVTAIWGSRQKAKLAKNLPAPKLVNNHTALSTIVQHEDDANTKPLAVSGGTTPNSKEQISRLDNLILDSIIRLKEPKGSDRAAIAAYIEDQYWSPSNLRTLLSTKLKHMVASGKLIKIKHKYRIATNSTISEKQRCSSLLLLDGRPKDSPKAEKSNNILSKSQIDAEISKARGVVAAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEQARVFAKALTKALKCRTLHICSIPSPSFPNAPIQLFQNYS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0242 309 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0242 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lja2g0242 309 PANTHER MYB TRANSCRIPTION FACTOR 1 289 - -
Lja2g0242 309 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Lja2g0242 309 Coils Coil 237 274 - -
Lja2g0242 309 CDD H15 120 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0242 309 CDD SANT_TRF 6 57 - -
Lja2g0242 309 Gene3D - 8 87 - -
Lja2g0242 309 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0242 309 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Lja2g0242 309 Pfam linker histone H1 and H5 family 119 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0242 309 Gene3D - 111 191 IPR036388 -
Lja2g0242 309 SUPERFAMILY "Winged helix" DNA-binding domain 113 191 IPR036390 -
Lja2g0242 309 SMART sant 4 59 IPR001005 -
Lja2g0242 309 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lja2g0242 309 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0242 Lja-Chr2 2238156 2242680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0242 1 285 Single Myb Histone (SMH) Gene Family AT5G67580 51.361 3.96e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja2g0242 Linker_histone 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0242 K09422 - gmx:778165 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0242 2 2238156 2242680 Lja4g3444 4 65091626 65095864 PCT