Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0235 ATGCCGATGTTTCAGCCTTCTAAAAGGGACATGGTGGCGGGATTTGACGGTAGCGGCGACGGCCAGATTCTAGATCTGGACACCGCCGTCAAAGACGGTGTCCTAGGTGGGGTTGACGGCGGAGTTTTGGGAGGTGGGGTTTGTGAGAAGTTGGATCTGGCGAACATGATTCAAGAGATGGAGCTATGTGAGGTTCCGAGTGTGTTCATTTGTCCAATCTCGCTTGAGCCAATGCAAGACCCTGTGACTCTCTGCACTGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAACCTTGGCCACTTCACATGCCCCACCACGATGCAAGAGCTTTGGGATGATTCGATTACGCCGAATACCACGCTTTACAGGCTCATTCACACATGGTTCTCACAGAAGTATATGTTGATGAAGAAGAGGTCAGAGGATGTGCAGGGTAGAGCTTCGGAGCTTGTCGAGACTCTGAAGAAGGTGAAGGGGCAAGCAAGAGTTCAGGCTCTCAAGGAGCTTCATCATGTGGTGGCTGCTCATGGGACTGCCCGGAAGACTGTGATTGATGAAGGTGGTGTTTCTGTTATGTCTTCATTGTTAGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAAGTGATTGGTATTCTTGTGAGTTTGACACTTGATTCCGAATCCAAGCGGAATCTCACGCAGCCTGCCAAGATTTCGTTGATGGTGGATATATTGAATGAGGGTTCGATCGAGACCAAGATCAATTGCACGCGGCTGATTGAATCGTTGATTGAGGAGAAGGATTTCCGGTCCGAGATTATCTCGAGTCATAGTCTGTTGGTTGGGTTGATGAGGCTTGTTAAGGATAAGAGACACAGCAATGGAATTTCCCCTGGGTTGAGCCTTCTTAGAACAGTGTGCTTTTATAAAGAAGTTAGGATTTTGTTAGTGAGCATTGGGGCTGTTTCTCAATTGGTTGAATTGTTGTCGGGTTTGGACCCTGATTGTTTGGAATTAGCGCTTTCTGTGTTGGATTCGTTGGCGTCGATACCTGAAGGAAGAGTGGCTTTGAAGGATTGTTCCAACACCATACCCATCATGGTGAGACTGTTGATGAGGATCTCAGAGAGCTGCACCCAGTATGCATTGTCAATCCTGTGGTCCGTGTGCAAGCTCGCGCCCGAGGAGTGCTCGTTGATTGCCGTTGATGCAGGGCTTGCTGCAAAACTCCTCCTCGTGATTCAGAGTGGTTGCAATCCGCTATTGAAGCAGCAGTCCGCCGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA 1350 0.483 MPMFQPSKRDMVAGFDGSGDGQILDLDTAVKDGVLGGVDGGVLGGGVCEKLDLANMIQEMELCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIHTWFSQKYMLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHHVVAAHGTARKTVIDEGGVSVMSSLLGPFTSHAVGSEVIGILVSLTLDSESKRNLTQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGISPGLSLLRTVCFYKEVRILLVSIGAVSQLVELLSGLDPDCLELALSVLDSLASIPEGRVALKDCSNTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSLIAVDAGLAAKLLLVIQSGCNPLLKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0235 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 448 - -
Lja2g0235 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Lja2g0235 449 PANTHER WDSAM1 PROTEIN 38 448 IPR045185 GO:0061630
Lja2g0235 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Lja2g0235 449 Gene3D - 146 293 IPR011989 -
Lja2g0235 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 145 IPR013083 -
Lja2g0235 449 CDD RING-Ubox_PUB 69 111 IPR045210 -
Lja2g0235 449 SUPERFAMILY RING/U-box 60 135 - -
Lja2g0235 449 SUPERFAMILY ARM repeat 235 435 IPR016024 -
Lja2g0235 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Lja2g0235 449 Gene3D - 294 429 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0235 Lja-Chr2 2151817 2154304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0235 1 449 U-box Gene Family AT3G49810 75.056 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0235 - - gmx:100816457 788.104