Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0225 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTCAAAAGAGGCCCATGGTCACCTGAAGAAGATGCCAAACTCAAAGCTTACATCGATCACCATGGAACCGGTGGAAACTGGATTGCCCTGCCACAAAAGATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGCCCAAACATTAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAACCTCTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAGTTACCTGGGCGCACAGATAATGATATAAAGAACTACTGGAACACAAGGCTGAAGAAGAAGCTCCTTGGCAAGCAAAGGAAGGAGCAACAGGCTCAGGCTCGCCGAGTCAGTACCATGAAGCAAGAGATCAAAAGAGAAACAGATCAGAATTTGATGGTGGCTTCTGGAGTTAACACAACTCATGCAGCTTTCTATTGGCCTGCCGAGTATTCTATTCCAATGCCAGTGGCAAATGCTTCCATCCAAGACTATGATTTTCACAACCAAACATCCCTCAAGAGCTTGCTAATCAACAAACAAGGGGGAGTTAGATTTTCCTATGATCATCAACAGCCATACTCCAATGCAATCACTGCCACCGCAAATTCGCAAGACCCTTGTGACATTTATCCTGCATCCACAATGAACATGATAAACCCGGTGGCCATGGTGAGTAATGCAAACATTGGTGGAACCACTTGTCAGCAATCAAATGTATTTCAAGGGTTTGAAAACTTCACAAGTGATTTCAGTGAGCTAGTCTGTGTGAACCCACAAACAATAGATGGTTTTTATGGAATGGAATCCTTGGAGATGAGCAATGTCAGCAGCACCAACACGCCTTCAGCAGAAAGCACTAGTTGGGGAGATATGAGCTCTTTGGTTTACTCACCTTTGGTTTCTGACTATTTTGGAATGCAAATGCAATAA 978 0.4427 MGRAPCCDKANVKRGPWSPEEDAKLKAYIDHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARRVSTMKQEIKRETDQNLMVASGVNTTHAAFYWPAEYSIPMPVANASIQDYDFHNQTSLKSLLINKQGGVRFSYDHQQPYSNAITATANSQDPCDIYPASTMNMINPVAMVSNANIGGTTCQQSNVFQGFENFTSDFSELVCVNPQTIDGFYGMESLEMSNVSSTNTPSAESTSWGDMSSLVYSPLVSDYFGMQMQ* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0225 325 CDD SANT 71 113 IPR001005 -
Lja2g0225 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja2g0225 325 Coils Coil 122 142 - -
Lja2g0225 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja2g0225 325 CDD SANT 16 62 IPR001005 -
Lja2g0225 325 PANTHER OS09G0431300 PROTEIN 1 321 - -
Lja2g0225 325 Gene3D - 7 68 - -
Lja2g0225 325 Gene3D - 70 146 - -
Lja2g0225 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja2g0225 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja2g0225 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja2g0225 325 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 321 - -
Lja2g0225 325 SMART sant 13 64 IPR001005 -
Lja2g0225 325 SMART sant 67 115 IPR001005 -
Lja2g0225 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja2g0225 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0225 Lja-Chr2 2041166 2043053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0225 1 313 MYB Transcription Factor Family AT3G49690 50.000 5.98e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g0225 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0225 K09422 - gmx:106795158 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0225 2 2041166 2043053 Lja4g3479 4 65582416 65583981 PCT