LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0215	ATGCAGCAGCAACATCCTTTCCCCATTTTGCTACTATGCTTGCTGTTCTCAAGTGGAATTGCCACAGCATCACTGGCTAGAGACTATGAGATTCTGCTCCGGGTCAAGAACACACAGCTTCAAGACAAGAACAAGAGCCTCCATGACTGGGTTTCAACCACAAACCACAACCCTTGTAACTGGACTGGCATCACCTGCGATGCTAGAAACAAATCAGTTGTCTCCATTGATCTCTCCGAAACTGCAATTTACGGCGATTTCCCGTTCGGTTTCTGCCGCATCCACACCCTCCAGAGCCTCAATGTTGCAGGCAATTTCCTCAGCAATGCTAATTCAATCTCTCCACAAACACTTCTCCCTTGTTCCAACCTCCAACGCCTAAACCTCTCCGACAACTTATTCGTCGGTGACTTACCGGAGTTCCCACCGGGGTTCACCAAGCTAACACACCTAGACCTCTCAAGGAACAACTTCACCGGCAACATTCCGGCCAGCTTCGGCCGGTTTCCGAAGCTGACCGTGCTCGTTTTAACCGCGAACCTTCTCACCGGAACAATTCCTCCATACTTAGGCAACCTCAGCGAGCTAACTCGATTGGAATTAGCTTACAATCCAATGAAACCAGGTCCATTACCTTCCCAGATAGGAAACCTTTCTAACCTGGAAAACTTGTTCCTCACCCAGTTGAACCTCATAGGAGAAATACCAAGCTCCATTGGCAACCTTGCATCACTCAACAACTTGGATTTGTCAGATAACTTTCTCTCCGGTGAGATTCCAAACACCATTTCAGGGTTGAAAAGTGTGATTCAAATTGAGCTTTACCTTAACAATCTCTCCGGTGAAATACCTCAAGGCTTTGGAAACCTCACCAGTTTGGTTTACTTAGACCTCTCTCAGAACGCTCTCACCGGAGCATTCCCAGAGGAACTAGCTTCCTTGAATCTCTCTTCTCTGAACTTGAATGACAACCTTCTTGAAGGTAAAGTCCCTGAAAGCTTAGCTGCAAATCCGAACCTGGTTCAACTGAGACTCTTCAACAACAGCTTCACCGGGAAACTACCTCAGGATCTGGGGCGAAACTCTCCGATAGAGGAATTCGATGTTTCATCGAATTACTTCACCGGAGAGTTTCCCAAGTTACTCTGCGAGAGGAACAAGCTTCAGAATCTCATCGCATTCACGAATGGTTTTTCTGGAAATCTCCCTGATGAGTACCAGAATTGTCATTCCCTGGAATACGTGAGAATCGAGTTTAACGAATTCTCCGGCGAGGTGCCGCCGCGGATTTGGAGCCTTCCACGGCTTTACTTTATGAAAATGCACAACAACAGGTTCGAAGGTCCTCTCTCTGCTTCCATCTCCGGCGCCACGGGACTCACCAAGCTCCTTTTATCCTCTAACAACTTCTCCGGGAAGTTACCGGCGGGAATCTGCGAACTCATTCACCTCTTGGAGATTGACATCAGCAACAACCGGTTCACCGGTGAAGTTCCTACCTGCATTACCGGGTTGAGGAAGTTGCAGAAGCTCAGGATGCAGGATAACATGTTCACCTGCGAGATTCCGGGTAACGTGACCTCATGGACTAAGTTAACCGAGCTGAACTTGTCGCACAACCGATTCTCCGGTGAAATCCCGCCGGAGCTTGGTAGCCTGCCGGACTTAATATACCTTGACCTTGCCGCGAATTCGCTGACCGGGGAGATTCCGGTGGATTTGACGAAGCTAACACTGAACCAGTTCAACCTCTCTGATAATAACTTGTCCGGGGAGGTTCCTTCAGGTTTCAACCACCAACGGTACTTGCAGAGTCTCATGGGAAACCCTGGTCTCTGCAGCCAGGTGATGAAAACCCTGCATCCATGTTCAAGACACAGACCAATTCCTCTTGTTGTTGTGATCATTTTAGCTATGTGTGTTATGGTTCTCGTGGGGACCCTGGTTTGGTTCCAGAAGAGAAATTCACGTGGAAAATCCACAGGTAGCAACTTTATGACAACCATGTTCCAAAGAGTGGGGTTCAATGAGGAAGACATCATGCCTTTTATAACCAGCGAGAACGTGATTGGGAGTGGTAGTTCAGGGCAAGTGTACAAGGTGGAATTGAAGACGGGGCAGACCGTGGCGGTGAAAAAGCTCTGGGGCGGGACGCAGAAACCGGACATGGAATCGGTGTTCAGGTCGGAGATTGAGACATTGGGTGTAATTAGGCATGCTAATATTGTGAAACTGTTGTTTAGTTGCAGTGGGGATGAATTCAGAATATTGGTTTATGAGTACATGGAGAATGGGAGCTTGGGTGATGTTCTGCATGCTGAAAAATGTGGGGAGTTGGAGGATTGGTCCAAAAGGTTCACCATTGCAGTGGGTGCAGCTCAGGGTTTGGCCTATTTGCACCATGATTGTGTGCCCGCGATTGTTCACCGGGACGTGAAGAGTAATAACATATTGCTAGACCATGATTTTGTTCCTCGCGTAGCTGACTTTGGATTGGCTAAGACATTGCAGCGCGAGGCCGGGGAAGGTCCTATGTCCAGAGTTGCAGGATCATATGGTTACATTGCTCCAGAATATGCTTATACACTGAAAGTGACTGAGAAGAGCGATGTGTATAGTTTTGGTGTGGTACTGATGGAATTGGTTACCGGAAAGAGGCCTAATGACTCTTCCTTTGGTGAGAGCAAAGATATAGTGAAGTGGGTCACTGAGACTGCTTTATCACCATCTCCTGAAGGTAGTAACATCGGAGGAGGTCTCAGTTGTGTTCTGTCTCAGATTGTGGACCCAAGATTGAACCCAGACACTTGTGATTATGAAGAGGTTGAGAAGGTTTTGAATGTGGCTCTGCTCTGCACCTCAGCATTTCCCATTAATAGACCCTCAATGAGAAGGGTGGTTGAGTTGCTCAAGGGCCATAAACCTTCTCCTGTATGCAGGAAAACTTAA	2949	0.4774	MQQQHPFPILLLCLLFSSGIATASLARDYEILLRVKNTQLQDKNKSLHDWVSTTNHNPCNWTGITCDARNKSVVSIDLSETAIYGDFPFGFCRIHTLQSLNVAGNFLSNANSISPQTLLPCSNLQRLNLSDNLFVGDLPEFPPGFTKLTHLDLSRNNFTGNIPASFGRFPKLTVLVLTANLLTGTIPPYLGNLSELTRLELAYNPMKPGPLPSQIGNLSNLENLFLTQLNLIGEIPSSIGNLASLNNLDLSDNFLSGEIPNTISGLKSVIQIELYLNNLSGEIPQGFGNLTSLVYLDLSQNALTGAFPEELASLNLSSLNLNDNLLEGKVPESLAANPNLVQLRLFNNSFTGKLPQDLGRNSPIEEFDVSSNYFTGEFPKLLCERNKLQNLIAFTNGFSGNLPDEYQNCHSLEYVRIEFNEFSGEVPPRIWSLPRLYFMKMHNNRFEGPLSASISGATGLTKLLLSSNNFSGKLPAGICELIHLLEIDISNNRFTGEVPTCITGLRKLQKLRMQDNMFTCEIPGNVTSWTKLTELNLSHNRFSGEIPPELGSLPDLIYLDLAANSLTGEIPVDLTKLTLNQFNLSDNNLSGEVPSGFNHQRYLQSLMGNPGLCSQVMKTLHPCSRHRPIPLVVVIILAMCVMVLVGTLVWFQKRNSRGKSTGSNFMTTMFQRVGFNEEDIMPFITSENVIGSGSSGQVYKVELKTGQTVAVKKLWGGTQKPDMESVFRSEIETLGVIRHANIVKLLFSCSGDEFRILVYEYMENGSLGDVLHAEKCGELEDWSKRFTIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDHDFVPRVADFGLAKTLQREAGEGPMSRVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELVTGKRPNDSSFGESKDIVKWVTETALSPSPEGSNIGGGLSCVLSQIVDPRLNPDTCDYEEVEKVLNVALLCTSAFPINRPSMRRVVELLKGHKPSPVCRKT*	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g0215	982	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	12	975	-	-
	Lja2g0215	982	Pfam	Protein kinase domain	686	894	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g0215	982	Gene3D	Ribonuclease Inhibitor	313	624	IPR032675	-
	Lja2g0215	982	SUPERFAMILY	RNI-like	354	613	-	-
	Lja2g0215	982	SMART	serkin_6	684	976	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g0215	982	Gene3D	Ribonuclease Inhibitor	26	312	IPR032675	-
	Lja2g0215	982	ProSiteProfiles	Protein kinase domain profile.	684	976	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g0215	982	SUPERFAMILY	RNI-like	75	424	-	-
	Lja2g0215	982	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2	12	975	-	-
	Lja2g0215	982	Gene3D	Phosphorylase Kinase; domain 1	674	761	-	-
	Lja2g0215	982	Pfam	Leucine Rich Repeat	531	553	IPR001611	GO:0005515
	Lja2g0215	982	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	807	819	IPR008271	GO:0004672\|GO:0006468
	Lja2g0215	982	SUPERFAMILY	Protein kinase-like (PK-like)	683	970	IPR011009	-
	Lja2g0215	982	ProSitePatterns	Protein kinases ATP-binding region signature.	690	713	IPR017441	GO:0005524
	Lja2g0215	982	Gene3D	Transferase(Phosphotransferase) domain 1	762	977	-	-
	Lja2g0215	982	Pfam	Leucine rich repeat N-terminal domain	27	67	IPR013210	-
	Lja2g0215	982	Pfam	Leucine rich repeat	459	517	IPR001611	GO:0005515
	Lja2g0215	982	Pfam	Leucine rich repeat	244	303	IPR001611	GO:0005515
	Lja2g0215	982	Pfam	Leucine rich repeat	147	205	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0215	Lja-Chr2	1952955	1956378	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0215	28	974	Receptor kinase-like Gene Family	AT5G65710	56.423	0.0	1040

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Lja2g0215		Pkinase	3.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0215	-		-	gmx:100813889	1414.44