Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0213 ATGCGTCTTCTGCTTCTCCTCTTCCTCTTCCATTTCACTCTCTCTGCACCCATCTCAGAGTACCGTGCTCTCCTCTCTCTCCGGGAAGCCATTACAGACGCCACCCCACCTTCACTCTCCTCATGGAACGCCTCAACCTCCCACTGTTCCTGGTCCGGCGTCACCTGCGACCCCCGCCGCCACGTCATCGCTCTCAACCTCACCGGCCTCAGCCTCACCGGTACTCTCTCCGCCGACGTCGCTCACCTCCCATTCCTCTCCAACCTCTCCCTCGCCGACAATGGGCTCTCTGGACCCATCCCACCGTCGCTGTCTGCAGTCACCGGACTCCGGTTTCTCAACCTCTCCAACAACGGCTTCAATGGCACCTTCCCTTCCGAGCTTTCCGTCCTCAAGAACCTCGAGGTTCTCGACCTCTACAACAATAACTTGACCGGAGTTCTCCCTCTCGATGTGACCCAGTTGCCGAACCTCCGCCACCTTCACCTCGGTGGCAACTTCTTCTCCGGCCAGATCCCTCCGGAGTACGGCCAGTGGCAGCACTTGGAGTACCTTGCTGTTTCCGGCAACGAGCTCGCCGGGGCCATTCCGCCGGAGATAGGGAACTTAACCAGCCTCCGGGAGCTCTACGTCGGGTACTACAACACCTACGAAGGCGGCATTCCGCCGGAGATTGGCAACCTGACGGAGCTCGTGAGGTTTGACGCAGCCTACTGTGGATTAACCGGTGAGATTCCGGTGGAGCTGGGGAAGCTTCAGAACCTGGATACTCTGTTTCTCCAAGTGAACGAGCTTTCAGGGTCTCTGCCATGGGAGCTTGGGAATCTGAAGAGCTTGAAATCCATGGATTTGTCTAACAACGTGATAACCGGTGAGATTCCGACGAACTTTGAAAACCTGAAGAATCTCACACTGGTGAACCTGTTCAGGAACAAACTTCACGGAGCTATTCCGGAGTTCATTGGCGAGTTGCCGGCGTTGGAGGTGGTGCAGTTGTGGGAGAACAACTTCACCGGAAGCATCCCTGTGGGTTTGGGGAAGAATGGTAAGCTCACGGTGGTTGATCTTTCTTCCAACAAGTTAACAGGTACTCTGCCTCCTAATCTCTGCAATGGGAACCGTCTTCAAACTCTGATAACTCTGGGGAATTTCCTCTTCGGTGCAATCCCTGAATCGCTTGGAAGCTGCAAATCACTGAGCAGGATTCGCATGGGAGATAACTTTCTGAATGGTTCAATCCCAAAAGGTCTTTTTGGACTTCCTAATCTAACCCAGGTTGAGCTTCAGGAAAATTACCTCTCTGGAAATTTTCCTCAGGATGATTCTGTTTCTGTTAATCTTGGTCAGATTACTCTCTCCAATAACAAACTCTCAGGGCCATTACCTCCTTCCATTGGCAACTTCTCTAGTGTGCAGAAGCTTCTCCTGGATGGAAACATGTTCTCTGGTCAGATACCCCCTCAGATTGGGAGGTTGCAACAGCTCTCAAAGATTGATTTTAGCCACAACAAGTTCTCAGGTCCTATTGCCCCAGAAATCAGTAAATGTAAGGTCTTAACATTTGTTGATCTTAGCCGTAATGAGCTCTCTGGTGAGATTCCAAATGAAATCACTGGTATGCGGATACTGAATTATTTGAATGTTTCAAGAAATCATCTAGTTGGTAGCATTCCAGGGTCTATTTCCTCAATGCAAAGCTTGACTTCTGTTGATTTTTCATATAACAATTTATCTGGTTTGGTTCCTGGTACTGGCCAATTCAGCTACTTCAATTACACTTCTTTCCTTGGAAACCCTGACCTCTGTGGACCCTATTTGGGTGCTTGCAAGGATGGCGTTGCCAATGGTGGGCACCAACCTCATGTTAAAGGGAGACTCTCTTCTTCAGTGAAGCTCATTCTGGTGATTGGGTTGCTTGCATGCTCCATTGTGTTTGCTGTTGCAGCAATACTCAAGGCTAGGTCTCTGAAGAAAGCCAGCGACTCGCGCGCATGGAAATTGACCGCGTTTCAACGCTTGGACTTCACTGTGGATGATGTTCTGGATTCCTTGAAGGAGGACAACATAATAGGGAAAGGGGGTGCTGGCATTGTCTATAAGGGTTCAATGCCAAATGGGGATCAGGTTGCTGTGAAAAGGCTTCCAGTTATGAGCAGAGGTTCTTCCCATGATCATGGATTCAATGCAGAGATTCAGACATTGGGGCGAATCCGTCACAGGCACATTGTTAGATTGCTGGGTTTCTGTTCAAATCATGAGACAAATCTGTTGGTCTATGAGTACATGCCAAATGGGAGTTTGGGTGAGGTTCTACATGGAAAAAAAGGGGGGCATTTACAGTGGGACACTAGGTATAAAATTGCTGTGGAGGCTGCAAAGGGACTTTGCTATCTACACCATGACTGTTCTCCGTTGATCGTCCATCGAGATGTAAAGTCAAACAACATCCTACTTGATTTTAACTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCCTACAAGATTCTGGAACTTCTGAATGCATGTCTGCTATTGCCGGTTCATATGGATACATCGCTCCAGAGTATGCGTACACATTGAAGGTTGATGAGAAAAGCGATGTGTACAGCTTCGGCGTGGTTCTCTTGGAGCTGATAACCGGTAGAAAACCGGTAGGAGAGTTTGGTGACGGTGTGGACATTGTGCAGTGGGTGAGAAAAATGACAGACTCTAATAAGGAAGGAGTTGTAAAAGTTCTTGATCCGAGACTTTCCTCAGTTCCCCTTCATGAGGTGATGCACATGTTCTATGTAGCCATCTTATGTGTTGAAGAACAGGCAGTGGAACGACCAACCATGCGCGAAGTTGTTCAAATTCTGACAGAGCTTCCTGGTTCTAAACAAGGGGACTTAACAATCACAGAATCCTCTTTGCCATCATCAAACGCTCTAGAATCTCCAACAGCAGCCTCTAAAGATCATGAAAATCCTCCTCAATCCCCACCAACCGATCTTCTTAGCATCTGA 3012 0.4871 MRLLLLLFLFHFTLSAPISEYRALLSLREAITDATPPSLSSWNASTSHCSWSGVTCDPRRHVIALNLTGLSLTGTLSADVAHLPFLSNLSLADNGLSGPIPPSLSAVTGLRFLNLSNNGFNGTFPSELSVLKNLEVLDLYNNNLTGVLPLDVTQLPNLRHLHLGGNFFSGQIPPEYGQWQHLEYLAVSGNELAGAIPPEIGNLTSLRELYVGYYNTYEGGIPPEIGNLTELVRFDAAYCGLTGEIPVELGKLQNLDTLFLQVNELSGSLPWELGNLKSLKSMDLSNNVITGEIPTNFENLKNLTLVNLFRNKLHGAIPEFIGELPALEVVQLWENNFTGSIPVGLGKNGKLTVVDLSSNKLTGTLPPNLCNGNRLQTLITLGNFLFGAIPESLGSCKSLSRIRMGDNFLNGSIPKGLFGLPNLTQVELQENYLSGNFPQDDSVSVNLGQITLSNNKLSGPLPPSIGNFSSVQKLLLDGNMFSGQIPPQIGRLQQLSKIDFSHNKFSGPIAPEISKCKVLTFVDLSRNELSGEIPNEITGMRILNYLNVSRNHLVGSIPGSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGGHQPHVKGRLSSSVKLILVIGLLACSIVFAVAAILKARSLKKASDSRAWKLTAFQRLDFTVDDVLDSLKEDNIIGKGGAGIVYKGSMPNGDQVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDFNYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSNKEGVVKVLDPRLSSVPLHEVMHMFYVAILCVEEQAVERPTMREVVQILTELPGSKQGDLTITESSLPSSNALESPTAASKDHENPPQSPPTDLLSI* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0213 1003 Pfam Protein kinase domain 686 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0213 1003 Gene3D Phosphorylase Kinase; domain 1 650 761 - -
Lja2g0213 1003 Gene3D Ribonuclease Inhibitor 337 613 IPR032675 -
Lja2g0213 1003 SMART LRR_sd22_2 131 152 - -
Lja2g0213 1003 SMART LRR_sd22_2 276 302 - -
Lja2g0213 1003 Pfam Leucine Rich Repeat 278 300 IPR001611 GO:0005515
Lja2g0213 1003 Gene3D Transferase(Phosphotransferase) domain 1 762 972 - -
Lja2g0213 1003 MobiDBLite consensus disorder prediction 963 1003 - -
Lja2g0213 1003 Gene3D Ribonuclease Inhibitor 172 271 IPR032675 -
Lja2g0213 1003 SUPERFAMILY Protein kinase-like (PK-like) 675 955 IPR011009 -
Lja2g0213 1003 SUPERFAMILY L domain-like 348 606 - -
Lja2g0213 1003 Pfam Leucine Rich repeats (2 copies) 132 172 IPR025875 -
Lja2g0213 1003 Gene3D Ribonuclease Inhibitor 18 171 IPR032675 -
Lja2g0213 1003 Gene3D Ribonuclease Inhibitor 272 336 IPR032675 -
Lja2g0213 1003 ProSiteProfiles Leucine-rich repeat profile. 133 154 IPR001611 GO:0005515
Lja2g0213 1003 SUPERFAMILY RNI-like 65 409 - -
Lja2g0213 1003 Pfam Leucine rich repeat N-terminal domain 19 57 IPR013210 -
Lja2g0213 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Lja2g0213 1003 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 993 - -
Lja2g0213 1003 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 993 - -
Lja2g0213 1003 SMART serkin_6 684 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0213 1003 ProSiteProfiles Protein kinase domain profile. 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0213 1003 SMART LRR_typ_2 564 587 IPR003591 -
Lja2g0213 1003 SMART LRR_typ_2 131 154 IPR003591 -
Lja2g0213 1003 SMART LRR_typ_2 349 372 IPR003591 -
Lja2g0213 1003 SMART LRR_typ_2 276 299 IPR003591 -
Lja2g0213 1003 SMART LRR_typ_2 155 179 IPR003591 -
Lja2g0213 1003 SMART LRR_typ_2 324 348 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0213 Lja-Chr2 1908463 1912697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0213 12 982 Receptor kinase-like Gene Family AT5G65700 80.428 0.0 1588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja2g0213 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0213 - - ccaj:109800149 1760.73