Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0212 ATGGATTGTTTTGCTTGCCCATATGATGATTTTGACATGCACTCTTTCTCCACTCTCCCAGATAGCGATTCTTCTTATCAGTGTTTCAACTATGAAACAACACCAAATTTTGTCCCTGCTGAGGTTTCTAATTACTCTGTTGCCTCAGCAAAACCAACCAGTGACATGATCATGCCTTCTTCCTCTCCAATACCATCCCAACTTATTTCATTCAACCACTTCAACAACCCTGCTTTGGTTTCTCAAGGTGCATCTGAGGACAGTATTTTCTCAAATTATGGTAATCCCCCGAACCAATTCGCTGCGAGGACCCCAACTCAAACTCAAGAACACATAATAGCCGAAAGAAAAAGAAGGGAAAAGCTCAGCCAGAATTTCATTGCTCTTTCTGCAATTCTTCCTGGCCTTGCGAGGATGGACAGAGGTTCTATTTTGGGAGTTGCTATCATGTATGTGAAACAATTACAGGAGCAAGTGCAGACTCTGGAGGAGCAAGCAGCCAAGGAAGGAGTTGGATCCGCACTTCTAGTAAAGAGATCTGTTCTCTTCATCAGTGATGATAGCCTAACAAAATCTGATAAAATCTTTGACAACCACTGTTATAAGTCACTCCCTGAAATCAGAGTAAGAGTTTCTGGCAACGATGTACTCATCAAGATTCATTGTCACAAACAAAGTGGATATGAGACCATAATACTTGGAGAAATAGAAAAGCATGATCATCTCACTGTCCACAGTTTCAGCTTTTTGCCCTTTGGGAATACCATTATTGATGCAACTATTATTGCTAAGATGAACAAGGAAAACTGCAAGACATCAAAGGACATCGTAAGAAGCCTGCAGCAGGCTTTGAAGCAGATCATTTGA 867 0.4118 MDCFACPYDDFDMHSFSTLPDSDSSYQCFNYETTPNFVPAEVSNYSVASAKPTSDMIMPSSSPIPSQLISFNHFNNPALVSQGASEDSIFSNYGNPPNQFAARTPTQTQEHIIAERKRREKLSQNFIALSAILPGLARMDRGSILGVAIMYVKQLQEQVQTLEEQAAKEGVGSALLVKRSVLFISDDSLTKSDKIFDNHCYKSLPEIRVRVSGNDVLIKIHCHKQSGYETIILGEIEKHDHLTVHSFSFLPFGNTIIDATIIAKMNKENCKTSKDIVRSLQQALKQII* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0212 288 PANTHER BHLH TRANSCRIPTION FACTOR 77 286 - -
Lja2g0212 288 PANTHER BHLH TRANSCRIPTION FACTOR 1 72 - -
Lja2g0212 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 167 IPR036638 GO:0046983
Lja2g0212 288 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 77 286 - -
Lja2g0212 288 Coils Coil 152 172 - -
Lja2g0212 288 SMART finulus 112 161 IPR011598 GO:0046983
Lja2g0212 288 Gene3D - 99 169 IPR036638 GO:0046983
Lja2g0212 288 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 72 - -
Lja2g0212 288 Pfam Helix-loop-helix DNA-binding domain 109 156 IPR011598 GO:0046983
Lja2g0212 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0212 Lja-Chr2 1879412 1880717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0212 90 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.231 5.87e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0212 HLH 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0212 - - lja:Lj2g3v1984450.1 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0212 2 1879412 1880717 Lja2g0212 2 1879412 1880717 ECH