Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0211 ATGATGCAAGCTTTTGCTGCATGTCCACTTGATGACTTTGACTTCCACTCTTTCTCCACTGCCACAGAGAGCAATGACTTGTCTTCTCTTCAATGTTTCAACTACGAAACCAAACCAAATTGTTTCCCTGATCAGTCTATTGCCCCAGAAAAACCAGCTAAGAGGCTCAAGACAATGAACACTTGCGCCACTGACATGATCATGGCTCCCACTCCCAAGCCTTCAATTTCACCCCAGATCATTTCTTTTGATCAGCAGTTCAACAATGCTGCTAACTTGGTTTCTCAAGGTTTATCTGAGGACATTAATATTTTATCAAATTATGATAATCAAGCAAGCCAGGTTGCCACCAGGAGCCCAACCCAAGCTCAAGAACATGTCATAGCAGAAAGAAAACGAAGGGAGAAACTCAGCCAGAGTTTCGTTGCTCTTTCGGCCATCCTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTATCTTGGGAGGTGCTATCAGGAGTGTGAAACAATTACAGGAGCAAGTGCAGACTCTGGAGGAGCAAGCAGCCAAGAAGAGAACTGGATCTGGGGTTCTAGTAAAGAGATCAGTTCTCTACATCAATGATGATGGCTCAACTATATCAGATAAAAATTCTGAAAGCCACTGTGATCAGTCACAGCTCCCTGAAATCAAAGTAAGAGCTTCTGGGGAAGATTTACTCATCAAGATTCATTGTGACAAACAAAGTGGATGTGCAGCTACAATACTCAGAGAACTAGAGAAGCATGATTATCTCACTGTCCAGAGTAGCAGCATTTTGCCCTTTGGGAATAACATCACTGATGTAACTATTATAGCTAAGGTAAATTATATCTTCTGGCAAAATGATGCAAATATTAAGTTTGAATTTCAGATTATTAATTTCATTGGTAAACCAAGGACAAGCCACTAA 930 0.4151 MMQAFAACPLDDFDFHSFSTATESNDLSSLQCFNYETKPNCFPDQSIAPEKPAKRLKTMNTCATDMIMAPTPKPSISPQIISFDQQFNNAANLVSQGLSEDINILSNYDNQASQVATRSPTQAQEHVIAERKRREKLSQSFVALSAILPGLKKMDKASILGGAIRSVKQLQEQVQTLEEQAAKKRTGSGVLVKRSVLYINDDGSTISDKNSESHCDQSQLPEIKVRASGEDLLIKIHCDKQSGCAATILRELEKHDYLTVQSSSILPFGNNITDVTIIAKVNYIFWQNDANIKFEFQIINFIGKPRTSH* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0211 309 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 90 282 - -
Lja2g0211 309 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 87 - -
Lja2g0211 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 187 IPR036638 GO:0046983
Lja2g0211 309 PANTHER BHLH TRANSCRIPTION FACTOR 2 87 - -
Lja2g0211 309 SMART finulus 127 176 IPR011598 GO:0046983
Lja2g0211 309 Pfam Helix-loop-helix DNA-binding domain 124 171 IPR011598 GO:0046983
Lja2g0211 309 Coils Coil 160 187 - -
Lja2g0211 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Lja2g0211 309 CDD bHLH_AtNAI1_like 123 195 - -
Lja2g0211 309 Gene3D - 112 186 IPR036638 GO:0046983
Lja2g0211 309 PANTHER BHLH TRANSCRIPTION FACTOR 90 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0211 Lja-Chr2 1871499 1873513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0211 33 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 37.868 1.85e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0211 HLH 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0211 - - lja:Lj2g3v1984450.1 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0211 2 1871499 1873513 Lja2g0211 2 1871499 1873513 ECH