Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0210 ATGGAAGTTCTTCTTAGACTATTCAGAAATCCCGCTGTCGTTTTCCGAAGGATCATTGGTCTTAAGCTTCCTCTACAGATAGCTTCAATCTTCAAAACAGAGAACTGCTACAGCACCATGAGCAACTCCTCCGGAAATGATCATAACACCACCTCTGATCAGAGGCCTTCCAAAACACTCAAGATTGTAAATTCTTCTCCTTCCTACGTTCTTTCAATTACCAATGAGAATCCATCACCAATGTTAAACTTTGATTTGACCCTGAAGCCAAAAGGCAAGGTTGTGAATGTGATGAATCATCAAAACAAGGAAATAAAACACATGGTACAGGAGAGGGAGAAAGCCAGAAGATCACCTCACCAAGTTCAACATCACATTCTTTCTGAGAGAAAGAGGAGACAAGATATTAGCCAACAGTTCATAGCTCTTTCAGCCCTTATTCCTGGCCTAAAAAAGGTTCAGCTAATGGATAAGGCCTCTGTGCTGCGAGACGCAGCACATGAAATAGCTCCAAGAGCAGGTGAAGGTACAGGAAGAGCAAATCAAAAGGAAAAGCACAGAGTCTGTGACGAAGATGTCTCAGACACATCCTCAAATCCAGGCAATGAAAACTCTTCTGACCGCTTAAAAACAGATAATGTCTCACTGCCTGAAATTGAGGCAAGGTTCTCAGAGAACAAAGTGTTGATCCAAATCCACTGTGAGAAAAAGGAGGGGGTGCTGATGGACATACTCAGGGAGATACATGACCTCCACCTATCAGTGATCAATAGCAGTACCTTGCTTTTTGGAACCTCCAAACTGGACATAACCATCATAGCCGAGATGGATGATGGGTTCAAGCTTAGCGTGAAGGAACTGGGTAGAAATCTTCGAGGGACAAAATGGACGATGGGCAATGGTATTTTCGTCTCCTTCTGGAAGGATTCTTGGATTCCATCTATGGATACTCTTGTGGAATTCTTGCCAGAGGACCTTCCTGAGGCGTGGGCTACTAACTTACCGATGACCTATTTCACATCTGATGGCGATTGGAACTGGGAGCTACTTTCCCAAACCCTCCCTGTCGAGGTTAATTTAAGGATGATCCCCAGAAACTTTTTGAAGTTATCTGGAACCATAGAGGACCCCCTCGCATCCAATCCTTCCCATGGAAAACAAGGCATAACAGGCTTCTTAGTTCTTACCAACAGTGAGAGGAAAAAGAGGAAGATGACAAATGATGATTTATGCCCCAGATGTAGCTTAGCAGAGGAAACTATCATGCACGCCTTAAGAGATTGTGATCTTGTCAAGGATGTGTGGGAAGGAATGATTGATGAAGACGATTGA 1332 0.4362 MEVLLRLFRNPAVVFRRIIGLKLPLQIASIFKTENCYSTMSNSSGNDHNTTSDQRPSKTLKIVNSSPSYVLSITNENPSPMLNFDLTLKPKGKVVNVMNHQNKEIKHMVQEREKARRSPHQVQHHILSERKRRQDISQQFIALSALIPGLKKVQLMDKASVLRDAAHEIAPRAGEGTGRANQKEKHRVCDEDVSDTSSNPGNENSSDRLKTDNVSLPEIEARFSENKVLIQIHCEKKEGVLMDILREIHDLHLSVINSSTLLFGTSKLDITIIAEMDDGFKLSVKELGRNLRGTKWTMGNGIFVSFWKDSWIPSMDTLVEFLPEDLPEAWATNLPMTYFTSDGDWNWELLSQTLPVEVNLRMIPRNFLKLSGTIEDPLASNPSHGKQGITGFLVLTNSERKKRKMTNDDLCPRCSLAEETIMHALRDCDLVKDVWEGMIDEDD* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0210 443 SMART finulus 126 180 IPR011598 GO:0046983
Lja2g0210 443 Coils Coil 98 118 - -
Lja2g0210 443 MobiDBLite consensus disorder prediction 178 193 - -
Lja2g0210 443 Pfam Helix-loop-helix DNA-binding domain 123 167 IPR011598 GO:0046983
Lja2g0210 443 PANTHER BHLH TRANSCRIPTION FACTOR 34 167 - -
Lja2g0210 443 Gene3D - 107 170 IPR036638 GO:0046983
Lja2g0210 443 PANTHER BHLH TRANSCRIPTION FACTOR 183 292 - -
Lja2g0210 443 MobiDBLite consensus disorder prediction 172 211 - -
Lja2g0210 443 MobiDBLite consensus disorder prediction 111 130 - -
Lja2g0210 443 Pfam zinc-binding in reverse transcriptase 394 435 IPR026960 -
Lja2g0210 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 169 IPR036638 GO:0046983
Lja2g0210 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 172 IPR011598 GO:0046983
Lja2g0210 443 MobiDBLite consensus disorder prediction 194 211 - -
Lja2g0210 443 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 183 292 - -
Lja2g0210 443 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 34 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0210 Lja-Chr2 1857589 1860046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0210 117 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.391 2.88e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0210 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0210 - - lang:109348843 226.483