Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0209 ATGATGTCACCAGAGGGAGAATCATGGACAAGTTGGTTGTGTGACTTGGAACCAGAGGATTGCAATTTCCTCAATGAATCAGACACAAACTGGGCAGGTGAAATTAGTTTCCCATCTGAAGCACAGGAACAGAACTTGCAGAGATCTTTCACTATAGATAGCAACCACTCTCACTCTACCACCACCTCCACCTTCAAAACAGAACACTGCAGCAGCACCATGAGCAATTCCTCCTCAGGGGAGGATGATAACACCACCTCTGAGAGGCCTTCCAAGACACTCAAGATGTCAAATGCTTCTCCCTCCTACATTCTTTCGTTTAGCAATGAGAATCCAGCACATATATTGAACTTTGATTCTACCCTGAAGCCAAAATCTAAGGCTTTGACTGTGAATGTGAATCATCATGGGAACAGGTCACTGGAAAGTCAAAAGAAGGAGACAAAACGCAAAGTACAGGAGGGGGAGAAGGCCAGATCTCCTCACCAAGCTCAAGATCACATAATTGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATTGCTCTTTCAGCCCTTATTCCAGGCCTAAAAAAGATGGATAAGGCTTCTGTGTTGGGGGATGCTATACAGCATGTGAAACAGCTCCAAGAGCAGGTGAAGCTACTGGAAGAGCAAAGCCAAAGGAAAAGCTCAGAATCTGTGGTGTATGTTGAGAAATCTAAGTCCTCTGTAGTGGATGATGATGTCTCACTCTCAGACACATCCTCAAATTCAGACAACTCTAATAATTTTTCACTGCCTGAAGTTGAGGCAAGGGTGTCAGAGAACAAAGTGTTAATCCGAATCCACTGTGAGAAACAAGAGGGGGTGCTGATGAACATACTCAAGGAGATACATAACCTTAATCTATCAGTGATCAATTGCAGTACCTTGCTTTTTGGGACCTCCAAACTGGACATAACCATCATAGCAGAGATGGATGATGGGTTCAGGCTGAGCGTGAAGGAACTGGCAAGAAAGCTTCGAGTGGGGCTCTTGCAATTCATGTAG 1038 0.4451 MMSPEGESWTSWLCDLEPEDCNFLNESDTNWAGEISFPSEAQEQNLQRSFTIDSNHSHSTTTSTFKTEHCSSTMSNSSSGEDDNTTSERPSKTLKMSNASPSYILSFSNENPAHILNFDSTLKPKSKALTVNVNHHGNRSLESQKKETKRKVQEGEKARSPHQAQDHIIAERKRREKISQQFIALSALIPGLKKMDKASVLGDAIQHVKQLQEQVKLLEEQSQRKSSESVVYVEKSKSSVVDDDVSLSDTSSNSDNSNNFSLPEVEARVSENKVLIRIHCEKQEGVLMNILKEIHNLNLSVINCSTLLFGTSKLDITIIAEMDDGFRLSVKELARKLRVGLLQFM* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0209 345 PANTHER BHLH TRANSCRIPTION FACTOR 6 342 - -
Lja2g0209 345 MobiDBLite consensus disorder prediction 38 97 - -
Lja2g0209 345 Coils Coil 201 228 - -
Lja2g0209 345 Coils Coil 138 158 - -
Lja2g0209 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Lja2g0209 345 MobiDBLite consensus disorder prediction 243 262 - -
Lja2g0209 345 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 6 342 - -
Lja2g0209 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 226 IPR036638 GO:0046983
Lja2g0209 345 CDD bHLH_AtNAI1_like 162 236 - -
Lja2g0209 345 MobiDBLite consensus disorder prediction 139 168 - -
Lja2g0209 345 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Lja2g0209 345 SMART finulus 168 217 IPR011598 GO:0046983
Lja2g0209 345 MobiDBLite consensus disorder prediction 134 168 - -
Lja2g0209 345 Gene3D - 159 231 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0209 Lja-Chr2 1848168 1850438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0209 10 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.650 7.61e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0209 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0209 - - lang:109348843 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0209 2 1848168 1850438 Lja4g2692 4 38024395 38027501 PCT