Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0207 ATGATGTCACCAGAGGAAGAATCATGGACTAGTTGGTTGTGTGACTTGGAACTAGAGGATTGCGACTTCCTCAATGAACCTGACACAAACTGGTTAGATGAGAGTTTCCTGTCTGAAGACTCTGCTCCACAAGAGCTGAACTTGCAAACATCTTTCTCTAACGATAGCAACCACTCTTGCTCCACCATGAGCAACTCCTCCTCAGGGGATGATGATGATAACAGCTCTGAGAGGCCTTCCAAGACACTCAAGAATGATGCTTCTCCCTGCTACATTTTTTCATTTACCAATGAGAATCCAGCGCCAATATTAAACTTTGAATCAACTTTGAAGCCAAAAGACAATGCTGTGAATGTTAATCATCATGAGAACAGGTCTAATTTGCCCTCAAAGAGGTCCTTGGAAAGTCAAAAGAAGGAACCAAAACGCAAAGTACAGGAGAGGGAGAGGGTCAGATCTCCTCACCAAGCTCACGATCACATTCTTGCTGAGAGAAAGAGGAGAGAAAATATTAGCCAGCAGTTTATAGCTCTTGCAGCTCTTATTCCAGGCCTCAAAAAGATTGATAAGGCCTCTGTGCTGGGGGACGCTATACAGCATGTGAAACAGCTCCAAGAGCAGGTGAAGCTACAGGAAGAGCAAACCAACAGGAAAAGCACAGAGTCAGTGGTGTATTTTGAGAAATCTAAGTCCTCTGTGGACGAAGATGTCTCAGACACATCCTCAAATTCAGGCACAGAAAATAATGGTTCACTGCCTGAAATTGAGGCAAGGATGTCAGAGAACAAAGTGTTGATCCGAATCCACTGTGAGAAACAGGAGGGGGTGCTGATGAACATACTCAAAGAGATAGACAACCTTCATCTATCAGTGATCAATAGCAGTACCTTGCTTTTCGGGACCTCCAAATTGTACATAACCATCATAGCAGAGATGGATGATGAGTTGAGGCTGAGCGTGAAGGAACTGGCAATAAAGCTTCGAGTGGGGCTCTTGCAATTCATGCAGTAG 1011 0.4431 MMSPEEESWTSWLCDLELEDCDFLNEPDTNWLDESFLSEDSAPQELNLQTSFSNDSNHSCSTMSNSSSGDDDDNSSERPSKTLKNDASPCYIFSFTNENPAPILNFESTLKPKDNAVNVNHHENRSNLPSKRSLESQKKEPKRKVQERERVRSPHQAHDHILAERKRRENISQQFIALAALIPGLKKIDKASVLGDAIQHVKQLQEQVKLQEEQTNRKSTESVVYFEKSKSSVDEDVSDTSSNSGTENNGSLPEIEARMSENKVLIRIHCEKQEGVLMNILKEIDNLHLSVINSSTLLFGTSKLYITIIAEMDDELRLSVKELAIKLRVGLLQFMQ* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0207 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 221 IPR036638 GO:0046983
Lja2g0207 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Lja2g0207 336 MobiDBLite consensus disorder prediction 42 70 - -
Lja2g0207 336 Gene3D - 151 224 IPR036638 GO:0046983
Lja2g0207 336 SMART finulus 161 210 IPR011598 GO:0046983
Lja2g0207 336 MobiDBLite consensus disorder prediction 120 166 - -
Lja2g0207 336 Pfam Helix-loop-helix DNA-binding domain 160 205 IPR011598 GO:0046983
Lja2g0207 336 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 332 - -
Lja2g0207 336 PANTHER BHLH TRANSCRIPTION FACTOR 5 332 - -
Lja2g0207 336 Coils Coil 194 221 - -
Lja2g0207 336 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0207 Lja-Chr2 1824785 1826969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0207 129 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.667 1.06e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0207 HLH 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0207 - - lang:109348843 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0207 2 1824785 1826969 Lja2g0207 2 1824785 1826969 ECH