Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0206 ATGGAGAAACTAAACACACCAACAGAGGCATCATCATCTTGCTGGTTATCTGATTTGCTATTGCAGGAAATGGATGATTGCAATTTTTTCCAACAATGCAATCCGAACTTGCTTGGCGATGAAGAGTTTCTTTCACATGATATAGTGAGTGCTTTTCAGAGTGACAATTTGCAACAACAACAACAACCTCTGTCTTCTGAGAGTTACTCTTCTTACCCTGTTTCAAATTCTGAGACTGTGTGGAATTCTTCCACTGATGAAACGTGTTTTGAGAGACCCGCTAAGCAGCAGAAAACCAAACACGTTTTACCAGATCAATCCAACTCTTCTTCACCTTCTTCACCTACCTCTCAGATCCTGTCCTTTGAGAACACCCATCTTTATGGCTTAGATTGTAGCTTGAACCCGAATTTGCAGAACGAGGGTGTTTCAGTTTCAACACCCCAACTGCGGAATGTGAATTTTCCAGCACAAAATCGAAAAGGGTCAACACAAAATCAAAACTTTGAAACCATAACAAACCCTCAAGGAAAAGGTAGCAAGAAATCACATGGTCAGGATCACATCATAGCTGAGAGAAGGCGTAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTTGCAGCCCTTATTCCTGGTTTAAAGAAGATGGACAAGGCTTCAGTCCTTGGAGACGCTATCAAGTACGTGAAAGTGCTTAAAGAGCGTTTGAGGTTACTGGAAGAACAGAACAAGAACAGAGCAATGGAATCTGTGGTGGTGGTTAACAAACCACAAATCAGCAACGATGATAATTCATCATCCTCATGCGATGATGGTACCATTATTGGGAGTGAAGAAGCTCTCCCCCATGTTGAAGCAAGAGTGTCAGAGAAGGACGTGCTCCTCCGATTACACTGCAAAAAGCAAAAGGGGCTTTTGCTGAAAATATTGTTTGAGATTCAAAACCTTCATCTCTTTGTCGTCAATAGCAGTGTCCTTCCTTTTGGAGATTCCATCCTTGACATTACAATTGTTGCTCAGATGGGAGCAGAATACAACTTGACCATAAACGAACTAGTAAAAAATTTGCGAGTGGCTGCATTGAGATCCATGTCTTCATAA 1101 0.4178 MEKLNTPTEASSSCWLSDLLLQEMDDCNFFQQCNPNLLGDEEFLSHDIVSAFQSDNLQQQQQPLSSESYSSYPVSNSETVWNSSTDETCFERPAKQQKTKHVLPDQSNSSSPSSPTSQILSFENTHLYGLDCSLNPNLQNEGVSVSTPQLRNVNFPAQNRKGSTQNQNFETITNPQGKGSKKSHGQDHIIAERRRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKVLKERLRLLEEQNKNRAMESVVVVNKPQISNDDNSSSSCDDGTIIGSEEALPHVEARVSEKDVLLRLHCKKQKGLLLKILFEIQNLHLFVVNSSVLPFGDSILDITIVAQMGAEYNLTINELVKNLRVAALRSMSS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0206 366 MobiDBLite consensus disorder prediction 56 77 - -
Lja2g0206 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 249 IPR036638 GO:0046983
Lja2g0206 366 MobiDBLite consensus disorder prediction 92 118 - -
Lja2g0206 366 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 365 - -
Lja2g0206 366 SMART finulus 189 238 IPR011598 GO:0046983
Lja2g0206 366 Pfam Helix-loop-helix DNA-binding domain 187 232 IPR011598 GO:0046983
Lja2g0206 366 Gene3D - 176 248 IPR036638 GO:0046983
Lja2g0206 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Lja2g0206 366 PANTHER BHLH TRANSCRIPTION FACTOR 7 365 - -
Lja2g0206 366 MobiDBLite consensus disorder prediction 157 180 - -
Lja2g0206 366 MobiDBLite consensus disorder prediction 157 185 - -
Lja2g0206 366 Coils Coil 229 249 - -
Lja2g0206 366 MobiDBLite consensus disorder prediction 100 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0206 Lja-Chr2 1819258 1822452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0206 84 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.493 1.68e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0206 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0206 - - gmx:100816551 338.961