Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0200 ATGGCTGCATCAGAGATTGGCCTTCTCTCCATGACTCAGATCCAAAAATTATCACCATCACCATCAACATCATCACAACATCCCCAACCAAACCCTAACTCCGCCTCTACCACCACCACCACGACCTCCGCCACTTGGATGTGGAACCCTAGCAGCAGAGAGAACCACCGTGAGGAAGCTGAAGAAGATGAGTCATGGGAGGTCAGAGCCTTCGCCGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCGAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTCCGTTCAGCCCAAGCTCTCGGCGGCCACATGAATGTCCACCGCCGTGACCGCGCTCGCCTCCACCAAGTTCACCCGCCCAGTTCCATCCCCTCTCACCCTACACCACCCTTCATAAACATTCCACCTCATCACCAGGACCTTGGTTTGTGCCTTCTCTATCATTTGCCAAGCCCTAATAGTACTACTGTTCCCAATCTTAATGTAAATGGAGAATCTCCCTCTACTCTTCTCTCCATCTCACCCTATCAACCAAACAACTTGATGATGCAAACTTGCTCTTCACCTTCATTTAATTTTCCACTAGCTCAGGTTTCTTCACCTCATATCAATGGCAGTGTTCCTTCTTACTTCTGCAACTCCACCACCAAACTGGAGCAACCTCCAACCTTAAGATCTATTGATAATGGCCACCTGGAAGAGCTTGATCTAGAGCTCCGTCTCGGGCACAAGGCAACACCAACATGA 756 0.504 MAASEIGLLSMTQIQKLSPSPSTSSQHPQPNPNSASTTTTTTSATWMWNPSSRENHREEAEEDESWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQVHPPSSIPSHPTPPFINIPPHHQDLGLCLLYHLPSPNSTTVPNLNVNGESPSTLLSISPYQPNNLMMQTCSSPSFNFPLAQVSSPHINGSVPSYFCNSTTKLEQPPTLRSIDNGHLEELDLELRLGHKATPT* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0200 251 MobiDBLite consensus disorder prediction 1 67 - -
Lja2g0200 251 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lja2g0200 251 PANTHER OS07G0101800 PROTEIN 47 246 - -
Lja2g0200 251 SMART c2h2final6 88 110 IPR013087 -
Lja2g0200 251 MobiDBLite consensus disorder prediction 8 51 - -
Lja2g0200 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Lja2g0200 251 Pfam C2H2-type zinc finger 88 112 - -
Lja2g0200 251 SUPERFAMILY beta-beta-alpha zinc fingers 85 115 IPR036236 -
Lja2g0200 251 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 47 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0200 Lja-Chr2 1734090 1734845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0200 43 246 C2H2 Transcription Factor Family AT4G17810 38.756 2.17e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g0200 zf-C2H2_6 5.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0200 - - lja:Lj2g3v1984740.1 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0200 2 1734090 1734845 Lja2g0200 2 1734090 1734845 ECH