Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0199 ATGAATAAAAATTGTATATCTCTCTCTTCGTTTGATATGTCCATGGCTGGTTTGGATTTAGGCACACCATCATCATCACACTTCCTTCAAAACCTCCACAGAGAAGATCACTTCAACCTTCAGCAGCAGCAACAGCAACAACCACAGGAATCGGAGGAAGAACCCAACCACAACTCCGACCCGTTTTCAGCTGAAGATGGACCACGCTCCGGCGACTTGGTTGGCCGTCGACCACGCGGCCGGCCACTGGGGTCGAAGAACAAGCAGAAGCCGCCGGTTATCATAACTCGGGAGAGCGCCAACACGCTCCGGGCACACATCCTTGAAGTTGGGAACGGCTGCGACGTGTTTGACTGCGTCGCCACCTACGCGCGGCGGCGCCAGCGCGGGATCTGTGTGCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTGAGGCAGCCGGCGTCTGCGGGATCCGTTGTTTCCCTCCATGGAAGGTTTGAGATACTGTCACTCTCGGGATCTTTTCTGCCGCCGCCGGCTCCGCCGGGGGCAACCAGCTTGACGATTTACTTGGCCGGAGGGCAGGGGCAGGTAGTTGGTGGGAGTGTGGTGGGGGAGTTGACCGCGGCGGGTCCCGTGATTGTGATCGCGGCCTCGTTCACCAACGTGGCTTATGAGCGGTTACCTTTGGATGAGGAAGAAGAACAACAGCTTCAGATGCAACAACCACCTACGCCTGGTGGTGGTGGCGGCGATGTGGTGACCACCAACGCGTTTCCAGACCCGTCGTCGGGGCTTCCGTTTTTCAACTTGCCGCTGACGACGGCGATGCAGAGTAAAGTTTCATTGCCAGCTGTGGATCATGGTTGGGCGGGAAATTCGGCGGCGGCACGTTCTTCATTTTGA 891 0.5758 MNKNCISLSSFDMSMAGLDLGTPSSSHFLQNLHREDHFNLQQQQQQQPQESEEEPNHNSDPFSAEDGPRSGDLVGRRPRGRPLGSKNKQKPPVIITRESANTLRAHILEVGNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSLRQPASAGSVVSLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEEQQLQMQQPPTPGGGGGDVVTTNAFPDPSSGLPFFNLPLTTAMQSKVSLPAVDHGWAGNSAAARSSF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0199 296 MobiDBLite consensus disorder prediction 227 248 - -
Lja2g0199 296 Gene3D - 103 238 - -
Lja2g0199 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 217 IPR005175 -
Lja2g0199 296 ProSiteProfiles PPC domain profile profile. 100 239 IPR005175 -
Lja2g0199 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 235 - -
Lja2g0199 296 MobiDBLite consensus disorder prediction 31 94 - -
Lja2g0199 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 15 290 - -
Lja2g0199 296 MobiDBLite consensus disorder prediction 31 52 - -
Lja2g0199 296 CDD DUF296 104 187 IPR005175 -
Lja2g0199 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 290 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0199 Lja-Chr2 1713773 1716266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0199 74 292 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 67.544 2.11e-89 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0199 - - vvi:100262516 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0199 2 1713773 1716266 Lja4g2681 4 36999705 37001219 PCT