Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0196 ATGGATTCTCGCCAACCTCCGCATTCGCAGCCCAACATCACCATGGGACCCACTCCCTACCCCTACCCCCACCCCAACGCCACCATCACCCCCTCCACCATGGCCCCTCGATTCCCACCATTCAACACCCCCACCACCACCACCACCAACAACAACAACCCTTCCGAGCATTTCACCATCACCAGCAACAACACCAACAGCGACGCCTCCGCCTCCTTGAAGCCCTGCGGTTCCGCCTCTGACTCCGTCAAGAGAAAGAGGGGCCGCCCTAGGAAATACTCTCCCGACGGCAACATTGCTCTGAGCTTGGCCCCTTCTCCTTCTTCCTCCGCCAAGAAGAACAGAGGAAGACCCCCTGGCTCCGGGAAGAAGCAACTCCACGCGCTCGGAACTACTGGCACTGGTTTCACTCCCCATGTTATCACCGTCGATGCTGGCCAGGACATAGCTGCCAAACTTCTGGCCTTTTGTCAACAAGGACCTCGGACAGTTTGCATTCTTTCTGCTTCTGGTGCAGTCCGCAATGTCACCCTCGAAAAGCAAGCTGCGTCCGGGGGTGTTATCATGCATGAGGGCCAATTTGAGATCATATATCTCTCAGGTGCTGAACTACTATCTGAAAATAGTACTGGTAGTAACAGAATGGGTGGCTTGAGTGTGAATCTAGCAGGGCCGGATGGACGCATTTTAGGAGGCAGAGTTGTTGGAATGCTTACTGCCGCATCTGCAGTCCAGGTCATTGTGGGTAGCTTTATTGCGGATGGAAAAAAGTCTAACTCAAGTAACCTGAAATCTGGACCTCCTTCTATGCCGTCTTCCCAAACGTTAACTTTTGGTTCTCCCGTGACTCCAGCTAGTCCTCCTACCTCTCAAGGGCCTTCAACCGAGTCGTCTGATGACAATGGGAATAGTAGGCCTGGACTCTACAATAATGCCAGTCAGCCCCTTCATAATATGCCAATGTACACTCATCAAATATGGGCTGGCCAAACTCATCAGTGA 1002 0.5299 MDSRQPPHSQPNITMGPTPYPYPHPNATITPSTMAPRFPPFNTPTTTTTNNNNPSEHFTITSNNTNSDASASLKPCGSASDSVKRKRGRPRKYSPDGNIALSLAPSPSSSAKKNRGRPPGSGKKQLHALGTTGTGFTPHVITVDAGQDIAAKLLAFCQQGPRTVCILSASGAVRNVTLEKQAASGGVIMHEGQFEIIYLSGAELLSENSTGSNRMGGLSVNLAGPDGRILGGRVVGMLTAASAVQVIVGSFIADGKKSNSSNLKSGPPSMPSSQTLTFGSPVTPASPPTSQGPSTESSDDNGNSRPGLYNNASQPLHNMPMYTHQIWAGQTHQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0196 333 MobiDBLite consensus disorder prediction 27 77 - -
Lja2g0196 333 MobiDBLite consensus disorder prediction 101 115 - -
Lja2g0196 333 Gene3D - 138 264 - -
Lja2g0196 333 MobiDBLite consensus disorder prediction 1 133 - -
Lja2g0196 333 CDD DUF296 137 251 IPR005175 -
Lja2g0196 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 305 IPR039605 GO:0003680
Lja2g0196 333 MobiDBLite consensus disorder prediction 12 26 - -
Lja2g0196 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 252 - -
Lja2g0196 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 48 305 - -
Lja2g0196 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 251 IPR005175 -
Lja2g0196 333 MobiDBLite consensus disorder prediction 257 316 - -
Lja2g0196 333 ProSiteProfiles PPC domain profile profile. 133 273 IPR005175 -
Lja2g0196 333 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Lja2g0196 333 SMART AT_hook_2 112 124 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0196 Lja-Chr2 1691728 1695484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0196 83 333 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 45.833 6.33e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0196 - - gmx:100789687 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0196 2 1691728 1695484 Lja4g2676 4 36726700 36730563 PCT