Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0193 ATGCCAGTTCCACTTGCCCCCTACCCAACAACACCCCCAGCTCTATACACACATGCGCCAAATGGTGCACAGAGTCAACTTGTCTGTTCCGGGTGTAGAAACCTTCTGCTATATCCAGTTGGAGCCACCACTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTTCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTGATCATGTACATCCGCGGCGCCACAAGTGTTCAATGCTCTTGTTGTCACACGGTGAACCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCCACTGTGGGAACTGTAAGATGCTACTCATGTACCAATATGGAGCAGGATCTGTCAAATGTGCAGTTTGCAGTTTTGTAACATTAGTTGAGGCCTCAACAAGCATCAATGAGCAGAAAATCAGCACCTAA 441 0.4875 MPVPLAPYPTTPPALYTHAPNGAQSQLVCSGCRNLLLYPVGATTVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLIMYIRGATSVQCSCCHTVNLALEANQVAHVHCGNCKMLLMYQYGAGSVKCAVCSFVTLVEASTSINEQKIST* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0193 146 PANTHER PROTEIN LOL1 1 142 - -
Lja2g0193 146 PANTHER PROTEIN LSD1 1 142 IPR040319 -
Lja2g0193 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Lja2g0193 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Lja2g0193 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 103 133 IPR005735 -
Lja2g0193 146 Pfam LSD1 zinc finger 68 92 IPR005735 -
Lja2g0193 146 Pfam LSD1 zinc finger 29 53 IPR005735 -
Lja2g0193 146 Pfam LSD1 zinc finger 106 130 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0193 Lja-Chr2 1650407 1652782 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lja2g0193 zf-LSD1 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0193 - - cit:102618163 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0193 2 1650407 1652782 Lja4g2673 4 36657598 36659945 PCT