Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0190 ATGGGAGGGTTGCCTCCAGGTTTTCGTTTTCATCCAACTGATGAAGAACTGCTAGGCTATTACCTGAATAGGAAAGTTGAGGGTCTTGAAATTGAGCTTGAAGTTATCCCTGAGATTGATTTCTACAAATTTGATCCTTGGGAGTTGCCTGATAAATCTTTCCTTCCAAGAAGAGATTTGGACTGGTTCTTCTTCTGTCCGCGAGATCGCAAGTACCCAAATGGATCAAGGACAAATAGAGCTACCAAAGCTGGCTATTGGAAAGCCACTGGAAAAGACAGGAAAGTTGTGTGCCACCCTAGTCCATTCACTTCGCCCGTGACAGTGACCGGGTACCGGAAGACCCTTGTGTTTTATCGCGGAAGGGCCCCCTTAGGGGATCGAACGGATTGGGTCATGCATGAGTATCGCCTTTGTGATGATCCTGGCCAAGGTCCACAGGGTGCTTTTGCTTTGTGCCGAGTTATGAAAAAGAATGAGAAGGCCAATGAGAAAGGTAAAGGCAGGGCTGGGAACAATGGTAGTACCACCAATGGGAATGACACCTCAATGAGATTCTCCAACTCTGGTGACATTTCCTCTCTTTCAAGTCCTATTGATTCTCCAAGCCATATGGCTCCGGTGTCCGGGTTTGAGCAAGCTTCAACGGACACCAATTCTTCTAGCTTCTGGCTCTCTCCTGATATGATTCTTGATTCTTCAAAGGAATACTCTCAAACACAAGATGTTGTTGGATACTTTTCACAGCATGACTTAATGAACACAACAACACCTTGTCAATCATTTGGACATGCTGAAATATCACCGAGTTCATCCTACTCTAATTTTAATGGGGAAACTGAATTTTCTGATGCTCTCATGTCACCTTACTCTGGACAAGGAATCTTCATGGACTTGTGTGTAAATGAAGATATGGCTTATGAATACTATGACCAAATTAATTCAATCAGTGATCCAAAACAATTCTGA 969 0.4376 MGGLPPGFRFHPTDEELLGYYLNRKVEGLEIELEVIPEIDFYKFDPWELPDKSFLPRRDLDWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCHPSPFTSPVTVTGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDPGQGPQGAFALCRVMKKNEKANEKGKGRAGNNGSTTNGNDTSMRFSNSGDISSLSSPIDSPSHMAPVSGFEQASTDTNSSSFWLSPDMILDSSKEYSQTQDVVGYFSQHDLMNTTTPCQSFGHAEISPSSSYSNFNGETEFSDALMSPYSGQGIFMDLCVNEDMAYEYYDQINSISDPKQF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0190 322 Gene3D NAC domain 13 163 IPR036093 GO:0003677|GO:0006355
Lja2g0190 322 ProSiteProfiles NAC domain profile. 4 158 IPR003441 GO:0003677|GO:0006355
Lja2g0190 322 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 322 - -
Lja2g0190 322 MobiDBLite consensus disorder prediction 169 213 - -
Lja2g0190 322 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Lja2g0190 322 MobiDBLite consensus disorder prediction 162 213 - -
Lja2g0190 322 Pfam No apical meristem (NAM) protein 5 138 IPR003441 GO:0003677|GO:0006355
Lja2g0190 322 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0190 Lja-Chr2 1633390 1635713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0190 4 290 NAC Transcription Factor Family AT4G17980 55.068 4.05e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g0190 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0190 - - adu:107487585 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0190 2 1633390 1635713 Lja2g0190 2 1633390 1635713 ECH