Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0180 ATGTTGAAAGGCTCCTTTTTCTGCATATATCATGTGCTTCTTCTCAATAATGCCAACTATTCACCTCCAACGACCGTAGTTAAACCTCTCTTCTCCCTTCCTTCCTTCAATCCTCATGATTTCTTCAAAAGATTAAAACTTTACCCAGATGAACTAGTGGGGCATTTTCTTTTCTGCCAAGGGAGACGATGCAAGCCAGCTATGGTTTGCACTGCCAGTGATTTACAGCAATGGAAAGATTTTCCAAAAGGGCTTCGGGTTCTTCTTCTTGAAGGAGATAGCGGTTCTGCTACCGAGATAAGAGCAAAGCTTGAGGCCATGGACTATATTGTTTTTACTTTCTACAATGAGAATGAGGCCTTGTCAGCAATCTCTAGTGATCCTGAAGGCTTCCATGTTGCCGTGGTGGAGGTGAGTACAAGCAGCAACCAGGGTGGTTTCAAATTCCTTGAGAATGTGAAGGACTTGCCTACCATTATGACTTCCAACAGTCAATGCCTGAATACAATGATGAAGTGCATCGCGCTTGGCGCAGTTGAATTCCTCACTAAACCACTCTCTGAGGATAAGCTCAAAAATATTTGGCAGCATGTAGTTCACAAGGCATTCAATGCTGGGACAAATGCTCCGTCTGAATCACTAAGACCTGTCAAAGAATCTGTAGAGTCCATTTTACAGCTCCAAACTGATAATGGACAGCATGAAAGTAATATTTCAATAGATATAGAGAACGTGTCCAGGTTAGGTGATAATGACCATGAGCAGTCGGTTGGAAGTGATAAATATCCGGCTCCTTCAACCCCGCAATTAAAACAAGGGGCAAGGTTACTAGATGATGGTGATTGCCATGAGCAAACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGAGGAATCTAAATCTGTCGAAATTTCTTGTGAGAATTTAAACACGGAAAGTTCTTCTCAGCTTAGTAAACCTGAAAAGACTCTGATTAAGGAGGAAGAGGCTTTTGCCGATGGTTCCAAGGGTGAGATTGCTGTTTCACAGAATGAAGATAATAGAAAGTTTCTCGGCAGTGCTGAGGGTAATGAATCTCCAAATAAAACAGGTGTTCTTAGTGATTCCTGTGAGAAGAAAGCTAATCGGAAGAAGATGAAAGTTGACTGGACACCTGAATTGCACAAGAAATTTGTAAAGGCAGTGGAACAGTTGGGTATTGATCATGCCATCCCGTCTCGAATATTGGAGATCATGAAAGTGGAGGGCTTGACGAGGCACAATGTTGCAAGCCATCTTCAGAAATATAGAATACACAAGAAACAAATCATGCCTGGGGAAGACGACCGAAAATGTCAGAATCCAAGAGATCCAATGCAAAGGAGCTATTGTTTGCAAAGACCAATCATGGCCTACCCACCATATCATTCTAACCACACCCTTCCTCCGGCTCCTATGTATCCAATGTGGGGACAACCTGGCAGTCAAACAGCTGGTGTGCAGATTTGGGGTAATCATGGTTATCCCCTTTGGCATCCTACAGAAAGTTGGCACTGGAAGCCATATCCCGGAATGCATGTGGATGCATGGGGGTGTCCAGTGTTGCCATCTCCTCAAGCTTCTCCTTTTCCCTACACTCAAAATGTGGCTGGGTGGCACAATGCTAAAGCAATGGATTATAGATTCAGCATGCCACAGAGTTCTGTAGAGAATTATCCGGCGGAGGAGGTGGTGGACAAGGTTGTGAAGGAGGCAATGAGCAAGCCATGGCTCCCCTTGCCCTTAGGCCTCAAACCTCCTTCCATGGATACTGTCTTGTCTGAGCTCTCCAGCCAAGGCATATCCGGCATCATCCCTTTTAGCAGCACCAAGGGCTCTATACCCCGCTGA 1875 0.4448 MLKGSFFCIYHVLLLNNANYSPPTTVVKPLFSLPSFNPHDFFKRLKLYPDELVGHFLFCQGRRCKPAMVCTASDLQQWKDFPKGLRVLLLEGDSGSATEIRAKLEAMDYIVFTFYNENEALSAISSDPEGFHVAVVEVSTSSNQGGFKFLENVKDLPTIMTSNSQCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAGTNAPSESLRPVKESVESILQLQTDNGQHESNISIDIENVSRLGDNDHEQSVGSDKYPAPSTPQLKQGARLLDDGDCHEQTNCSTEKESGEHDEESKSVEISCENLNTESSSQLSKPEKTLIKEEEAFADGSKGEIAVSQNEDNRKFLGSAEGNESPNKTGVLSDSCEKKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILEIMKVEGLTRHNVASHLQKYRIHKKQIMPGEDDRKCQNPRDPMQRSYCLQRPIMAYPPYHSNHTLPPAPMYPMWGQPGSQTAGVQIWGNHGYPLWHPTESWHWKPYPGMHVDAWGCPVLPSPQASPFPYTQNVAGWHNAKAMDYRFSMPQSSVENYPAEEVVDKVVKEAMSKPWLPLPLGLKPPSMDTVLSELSSQGISGIIPFSSTKGSIPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0180 624 Gene3D - 85 210 - -
Lja2g0180 624 SUPERFAMILY Homeodomain-like 379 437 IPR009057 -
Lja2g0180 624 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 380 435 IPR006447 GO:0003677
Lja2g0180 624 MobiDBLite consensus disorder prediction 348 370 - -
Lja2g0180 624 MobiDBLite consensus disorder prediction 244 323 - -
Lja2g0180 624 MobiDBLite consensus disorder prediction 306 322 - -
Lja2g0180 624 Gene3D - 376 438 - -
Lja2g0180 624 ProSiteProfiles Response regulatory domain profile. 86 199 IPR001789 GO:0000160
Lja2g0180 624 Pfam Myb-like DNA-binding domain 383 432 IPR001005 -
Lja2g0180 624 SUPERFAMILY CheY-like 83 201 IPR011006 -
Lja2g0180 624 SMART REC_2 85 195 IPR001789 GO:0000160
Lja2g0180 624 MobiDBLite consensus disorder prediction 276 305 - -
Lja2g0180 624 MobiDBLite consensus disorder prediction 337 373 - -
Lja2g0180 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 377 436 IPR017930 -
Lja2g0180 624 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 68 614 - -
Lja2g0180 624 PANTHER TRANSCRIPTION ACTIVATOR GLK1 68 614 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0180 Lja-Chr2 1551440 1560432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0180 68 612 Response Regulator Gene Family AT4G18020 47.232 4.28e-136 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja2g0180 Myb_DNA-binding 4.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0180 - - gmx:100779121 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0180 2 1551440 1560432 Lja4g2656 4 35985446 35993084 PCT