Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0160 ATGAAGTGTTTCTTCTTCAAACGAATATCCAACGCCGACCCAGATTTGAACCGAAGCAAGAAGAAAACTCAGGCGTCGAATCGACCCACCAGTGCGCTGTCATCGCCGAGGAGCGTAGAAGAATTGTACAGAGAGAAAGAGCAGAATTTCAGAGTTTTTACTTTGCAGGAGCTCGTAGATGCAACAAATGGTTTCAACAGGATGCTCATGGTTGGAGAAGGTGGTTTTGGGAAAGTATATAGAGGAACCATTAGCCCTCTAAACGGACAAGGTGACCCAGTTGTGGTTGCAATCAAGAAACTTAACACGCGTGGCTTACAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTGATCACCCGAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATGGTCGGAGAGAAATCCAACGGCTGCTGGTGTATGAGTTCATGCCCAATAGGAGCCTGGAAGATCATCTTTTCAGTCGTTCTTTCCCTCCCTTGCCTTGGAAAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGCATTATCTGCACCACGGATTGGAGGTTCAGGTTATCTACCGAGACTTCAAATCTTCAAATGTGTTATTAGACACGAAATTCCATCCCAAGCTGTCAGATTTCGGTCTTGCTAGAGAGGGCCCAACAGGTGATCAGACTCATGTATCTACTAAGGTAGTTGGGACTCGTGGATATGCTGCTCCAGAGTATATTGAAACAGGTCATCTCAGACTAAAGAGTGACATTTGGAGTTTTGGTGTGGTACTCTATGAGATCCTCACAGGAAGGAGGGTATTGGAAACCAAGCTTCCACCAGAGGAACAAAAGCTTTTACAGTGGGTTAAAACATACCCTGCTGAGAGTAGCAGATTCAGCATGATAATGGACCCGCGTCTCGCGAAACAGTATTCACTTGATGCTGCTCGGAGAATAGCCAAGTTGGCAGATAGCTGCTTGAAGAAGAATCCTGAAGATAGACCCTCCATGAGTCAGATAGTGGAAAGCTTGAAGCGAGCACTGCAGCTTTCAGAAACCTCAAACAGTACTCAGAATATGATCACTTTTCAATCCCCCAGATCTAAATTGACTCAAAAAGTTAAATAG 1134 0.4489 MKCFFFKRISNADPDLNRSKKKTQASNRPTSALSSPRSVEELYREKEQNFRVFTLQELVDATNGFNRMLMVGEGGFGKVYRGTISPLNGQGDPVVVAIKKLNTRGLQGHKEWLAEVQFLSIVDHPNLVKLLGYCSVDGRREIQRLLVYEFMPNRSLEDHLFSRSFPPLPWKTRLQIMLGAAQGLHYLHHGLEVQVIYRDFKSSNVLLDTKFHPKLSDFGLAREGPTGDQTHVSTKVVGTRGYAAPEYIETGHLRLKSDIWSFGVVLYEILTGRRVLETKLPPEEQKLLQWVKTYPAESSRFSMIMDPRLAKQYSLDAARRIAKLADSCLKKNPEDRPSMSQIVESLKRALQLSETSNSTQNMITFQSPRSKLTQKVK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0160 377 SUPERFAMILY Protein kinase-like (PK-like) 47 346 IPR011009 -
Lja2g0160 377 Gene3D Phosphorylase Kinase; domain 1 45 150 - -
Lja2g0160 377 PANTHER OS01G0588500 PROTEIN-RELATED 12 355 - -
Lja2g0160 377 MobiDBLite consensus disorder prediction 23 37 - -
Lja2g0160 377 MobiDBLite consensus disorder prediction 15 38 - -
Lja2g0160 377 Pfam Protein tyrosine and serine/threonine kinase 70 346 IPR001245 GO:0004672|GO:0006468
Lja2g0160 377 ProSitePatterns Protein kinases ATP-binding region signature. 71 100 IPR017441 GO:0005524
Lja2g0160 377 Gene3D Transferase(Phosphotransferase) domain 1 151 371 - -
Lja2g0160 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lja2g0160 377 CDD STKc_IRAK 71 348 - -
Lja2g0160 377 ProSiteProfiles Protein kinase domain profile. 65 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0160 377 MobiDBLite consensus disorder prediction 357 377 - -
Lja2g0160 377 PANTHER RECEPTOR-LIKE KINASE PLANT 12 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0160 Lja-Chr2 1311288 1314420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0160 3 346 Glycoside Hydrolase AT3G07070 43.575 2.37e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja2g0160 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0160 - K00924 gmx:100305403 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0160 2 1311288 1314420 Lja2g0160 2 1311288 1314420 ECH
Lja2g0160 2 1311288 1314420 Lja4g2636 4 35181503 35185386 PCT