Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0159 ATGCATCGCAACAACAACAACACCATTGCAGGGAGAACTCGCAGCAAGAAAGCCCTAGCTCCCGTCAATCATCCCAAGAACGACGTCGTTGCCCTCAGTTCCGATGACGACGACGGCGGCGATGATGGCACCACCACCGTTGGAGTTCAAGAAAGTCAAACCACCACCGACGCGCTTCCGGAATGCGGTGTGAAAAGAGGGAGGGCGAAGCGGAAGGTAGTCAGAATCGTGGAGAGTGATGGTGAGGTGAAGGTGAATCTCACGAGGAGGAGAAAGTTTGGGTTGGACGTTCTGATCGATGAGAAGAGCAATGTAGAGAGTGCAGAGGAGGAAACTGGAACGAGTGATGGTCCGGCACGGAGGACCCGTTCGCATTTTCGGGGGAGCAAGAAATTGAAATTAGGGGGGACCTTGAATCAACCCATTTGCCTTGATGGTGAAGAAGAAGAAGAAGGTGGTGGTGATGGTGATGGTGTTCTTGAATCTGGAGAAGAAGGAGCAAAGACATGCAGGGGAGGTGGTTGGTCTGATGAAGAAGGGGAAGAGTCGGAGAGCGAGGATGAGATGGATGATGATCCAATTTGGAGGAGTTGGAAATGCTCTGGAAACAGAAGAAACAAACATGGTGGTGAGCGATTGAAGGGTGATGGCAGTGTTTGTGAGAGTGAGAAAGAGAGGGGTGGTTCAAGTTGGAGGAAAGGCTCTGCAATTCAAAGAAACAAACGCACCCCTGAACTGAATAAAGGTGTGGATTCGCCAAAAACAGTGAAAAAGCACTTTAACACACAAAGGGAGAATCCTCAGCCAGAAGAGAAATCAGTAGAGGAGAAGGAATTGGAGGCTCTTTGGATTGAGTCTGATTACTGTTTTAGCCTTATCCAAGACAATAATGCCTCACCTTCCGAGCCTCCGGATTTGTGTCGTGGAGGGAAATTGGAGCATGATGTCTTTCTTGATGAAGAAATTGGACTTCGATGTAGATCTTGCCTACGCGTCCTAACTGAGATCAAATATGTTTTTCCCTCTTTTGCAACTCCACCGCGAAAGAAGAAATACTCTTACGCTTTGGATGATGTTGATCCCTCTGTAAGCTCTGAGTTTCAAGATAGAGTTGTAGGAGACGATGATGATGCTCACAACGACAATTACAATTACAATGGGACAGTGTGGGAAATAATTCCTGGAGTTAAAGAAAACATGTACCCTCATCAATGTGAGGCATTTGAATTTCTGTGGACCAATTTAGCTGGCGGAATCATTCATAACAAGTTGAAAGGGAAAAAGGAACTTCCTGTGGCTGGTGGATGCCTAATATCTCACGCTCCCGGCACCGGGAAAACTAGGCTCACTATCATGTTTCTTCAGTCATACATGGAGTTATATCCGAAGTGCAGACCAATAATCATTGCTCCTAAAGGGATTCTCGGTACGTGGGAGGAGGAGTTTAAAACTTGGAAGGTTGACATTCCCTTTCACAACATGAACAGCACTGATTGCTCTGACAATGTGAGAGATCACGTTATGAACCTTGTTTCTGGTCGTAATGTCTCAAAGCATGTGCTCATTTCGTATTGTCGTATGGCTAAGTTATATTATTGGAGGAGTGAAAAGAGCATCTTGGGAATCAGCTACAACCTGTTTGAGCAATTTACTAAGAAGGACTCAGATGAAAGGAAATTCCTTCTTGAAGTTCCTGGTTTAGTAGTTCTTGATGAGGGTCACACTCCTAGGAATTCAAAGAGTCTTATATGGAAATCTGTCTCAGAAATCCGGACAACAAAGCGCATCATCCTCTCCGGAACACCATTTCAGAATAACTTTGATGAGCTGTATAACACGCTGTGTTTGGCGAGGCCTCAGTTTACTAAATGCAATCCAAATGAGAAGGGGGAGAGCCTTAGAAATGAAAGCAAAGGGAGATGGGCGTACCTTACCAGTTCATTGGCCAAAGTTACCGATAATGGTAGAAGATCTAAGATATTGCAAGAGATCAGAAACATGATTTGTCCTTTTGTTCACGTGCACCATGGAACCATTCTGCAGGAGAGTTTACCAGGGTTGAGGAAGTTGGTAGTTACCTTAAATCCAACCATTTTGCAAAAGAACGTTTTTGAGGATATTGAGAGAAAAAGAAGTAGCCATCTTGCTCAGGGAAACTCAAATGTGCTAAAATTAGAATATGAGGAGACTCTAACTGCTATTCATCCTGCACTCTATGGTCTATCTGAAAGAATGAATCTCCCAAGGTTTAGATTGAATCCTGAGGAAGGTGTCAAAACGAAATTTCTGTTGGAACTCATAAGGCTTTGTGAGATTCGAAACGAGAAGGTGTTGGTTTTCAGCCAATACATCGATCCTTTGAAACTTTTGGCAAGCCAACTTGAACATCTTTTTTGTTGGAAGGAAGGAACAGATGTGTTACAATTGCATGGAAAAGTTGATGCAAAGCTGCGTCAAACTTCAATTAAAGCTTTTAACGATCCTGACAGCAATGTAAAGGTGATGCTAGCATCAACCAGGGCTTGTTATGAAGGTATCAGTTTGGTTGGAGCCTCAAGGGTTGTTTTACTTGATGTCGTGTGGAATCCCTCGGTGGAGAGGCAAGCGATAAGTCGTGCTTACCGGCTCGGGCAGAAGAAATTTGTGTACACTTACCATCTGATCACGGCAGGGACAAGGGATGAGGATAAATGTTGTCGTCAAGCTGAGAAAGATCACTTGTCCAAGATGGTGTTCTTTAATTCCGGGCGGGATCAGCATCATCAGAATGTTTCATCAGCAGAATTGGGGGATCAAATTCTGGAAGACTTGATTCAGCATAAAAAGATTGGGCATATATTTGAAAAAGTAGCTGTTATCCATGAAGAAACAAACTCCAATCTGAAGAAGGATTTTTTCCCCCTCTTGGTATAA 2913 0.4408 MHRNNNNTIAGRTRSKKALAPVNHPKNDVVALSSDDDDGGDDGTTTVGVQESQTTTDALPECGVKRGRAKRKVVRIVESDGEVKVNLTRRRKFGLDVLIDEKSNVESAEEETGTSDGPARRTRSHFRGSKKLKLGGTLNQPICLDGEEEEEGGGDGDGVLESGEEGAKTCRGGGWSDEEGEESESEDEMDDDPIWRSWKCSGNRRNKHGGERLKGDGSVCESEKERGGSSWRKGSAIQRNKRTPELNKGVDSPKTVKKHFNTQRENPQPEEKSVEEKELEALWIESDYCFSLIQDNNASPSEPPDLCRGGKLEHDVFLDEEIGLRCRSCLRVLTEIKYVFPSFATPPRKKKYSYALDDVDPSVSSEFQDRVVGDDDDAHNDNYNYNGTVWEIIPGVKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLEYEETLTAIHPALYGLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQILEDLIQHKKIGHIFEKVAVIHEETNSNLKKDFFPLLV* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0159 970 MobiDBLite consensus disorder prediction 104 275 - -
Lja2g0159 970 Gene3D - 371 653 IPR038718 -
Lja2g0159 970 MobiDBLite consensus disorder prediction 45 59 - -
Lja2g0159 970 MobiDBLite consensus disorder prediction 104 123 - -
Lja2g0159 970 Pfam SNF2-related domain 409 719 IPR000330 GO:0005524|GO:0140658
Lja2g0159 970 MobiDBLite consensus disorder prediction 144 158 - -
Lja2g0159 970 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 252 959 - -
Lja2g0159 970 CDD SF2_C_SNF 759 888 - -
Lja2g0159 970 SMART helicmild6 792 877 IPR001650 -
Lja2g0159 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 622 IPR027417 -
Lja2g0159 970 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 762 925 IPR001650 -
Lja2g0159 970 Gene3D - 685 963 IPR027417 -
Lja2g0159 970 MobiDBLite consensus disorder prediction 1 63 - -
Lja2g0159 970 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 620 IPR014001 -
Lja2g0159 970 SMART ultradead3 396 633 IPR014001 -
Lja2g0159 970 MobiDBLite consensus disorder prediction 244 275 - -
Lja2g0159 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 912 IPR027417 -
Lja2g0159 970 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 252 959 IPR044567 GO:0080188
Lja2g0159 970 MobiDBLite consensus disorder prediction 192 230 - -
Lja2g0159 970 Pfam Helicase conserved C-terminal domain 761 877 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0159 Lja-Chr2 1301962 1305703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0159 774 912 RAD5 or RAD16-like Gene Family AT5G05130 37.143 6.99e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja2g0159 SNF2_N 1.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0159 K10875 - jre:109003751 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0159 2 1301962 1305703 Lja2g0159 2 1301962 1305703 ECH