Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0147 ATGGAATTACTTAATTTTAAGCACCAGCTTGGCCTTATTTGTGTCATGCTGCTCTTACCTGTCCTGTGCACCTCTCAGGACACATTTACATGCTCCAGAGCAACCTATTATGGTAGCCCAGATTGCTATGGAAATCCAAGGGGAGCTTGTGGTTTTGGCGAATACGGAAAGATAGTAAATGACGGCAATGTCGCAGGTGTATCCTGGCTATGGAAGAATGGTTCTGGCTGTGGTGCTTGCTACCAGGTTAGGTGCAAAATACCACAATTCTGTGATGATTATGGAGCATACGTAGTGGTGACAGATTTTGGTGTTGGAGACAGAACAGACTTTGTGATGAGTCCACGTGGCTATTCAAGACTGGGAAAAAATGCAGATGCATCTGCAGAGCTTTTCAAATATGGTGTTGTGGATGTGGAATACAAGAGGGTCCCCTGCAGATACAATGGCTATAACATCTTGTTGAAGGTCCATGAACGCAGCAACAACCCTCACTACTTAGCTATTCTCATTATTTACATTGGTGGAACAAACGACATAACTGCTGTCGATTTGTGGCAGGAAGACTGCAAAGATTGGAGACCAATGCGCAGGGCTTTTGGGGCGGTGTTTGATGCTGAGAATCCTCCAAGAGGTGACATCAAATTGAGGTTCCAAGTGAGAGGGAGTGCAGGGTTGAATTGGGTAGAGTCCAAGAATGTTATTTCTAGTGATTGGAATGCAGGGGCTGTTTATGACTCAGAGATTCAACTTGATTAA 759 0.4453 MELLNFKHQLGLICVMLLLPVLCTSQDTFTCSRATYYGSPDCYGNPRGACGFGEYGKIVNDGNVAGVSWLWKNGSGCGACYQVRCKIPQFCDDYGAYVVVTDFGVGDRTDFVMSPRGYSRLGKNADASAELFKYGVVDVEYKRVPCRYNGYNILLKVHERSNNPHYLAILIIYIGGTNDITAVDLWQEDCKDWRPMRRAFGAVFDAENPPRGDIKLRFQVRGSAGLNWVESKNVISSDWNAGAVYDSEIQLD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0147 252 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Lja2g0147 252 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 251 - -
Lja2g0147 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Lja2g0147 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lja2g0147 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lja2g0147 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Lja2g0147 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Lja2g0147 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Lja2g0147 252 PRINTS Major pollen allergen Lol pI signature 65 76 IPR005795 GO:0005576|GO:0019953
Lja2g0147 252 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Lja2g0147 252 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Lja2g0147 252 PRINTS Major pollen allergen Lol pI signature 156 171 IPR005795 GO:0005576|GO:0019953
Lja2g0147 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Lja2g0147 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Lja2g0147 252 Pfam Expansin C-terminal domain 155 235 IPR007117 -
Lja2g0147 252 SUPERFAMILY Barwin-like endoglucanases 15 150 IPR036908 -
Lja2g0147 252 Gene3D - 21 147 IPR036908 -
Lja2g0147 252 PANTHER EXPANSIN-B3 5 251 - -
Lja2g0147 252 Gene3D - 148 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0147 Lja-Chr2 1226546 1228528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0147 10 251 Expansin Gene Family AT4G17030 61.728 1.25e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0147 - - gmx:100802855 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0147 2 1226546 1228528 Lja4g2614 4 34595014 34597384 PCT