Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0146 ATGGAAAATGGGGACTGCACTTTCCTGGCTCGACCCAGGTATAAGCAGCGTAAAGTTTCTGCCATTCGGGATTTCCCAGAAGAATGTGGACCATTTGTTTCAAAAAACGCTCCAGTTTCAAAGGTGGATATTGCTGATTCTGATTATGCTAATAATACAGTTCTTGAGGATAAGAATGATGAGCATGTAGAGGGTGGCACTGATAGAGTATCCAAGTGTGATAAAGACACTCAACATTCTGAGTTAAAAAATGATACGTTTCTCACTGAGAATCTTGACCAAGCAATTGACTGTGGTTTGATGAAGGAAAATTCTGTGGTCTCATCTCTTCAAGTGGATGAGCCTAATTTATCAAATTATGAACCTGCAAACGCGACAGTGGTGGGCATGGATACTTTTGATACAGAGTTAGAAAGAACAGAAAAATCTGTAAAACATGATTCCGCAGCTGGTGAGGCGCCTATGATTAATGGTGAGGTGCCTATGATTGATTGTTCAAAATCATTGTCATCTGATATCAATGTTGCTTATTCCGGTGCTTGTATGGGGGAGGCTGGAACTAAAAGGTATCTTCCTCGAAAAAAAGTTTCAGCTGTCAGAGAGTTTCCTCCTTTCTGTGGACCTCATGCTCCCCGTCTTAGTATGGATTATTGTCTGAAGGGGATCTCTTCTTTGAATAACAATAGAGCGGATCAACAGGTTTTGGCTGTAGATGACAGTTTATTGAAAAAAGCGGCAACCACTGATGTTAAAGAAAACAACACCGCAGATGAATACCATAAGAGAAAGCTTGTGGACATTGTTCAAGTTGATTATGAAGGGAATGCTAATTTGCCATCAGAAAACAAAAGAGGAAAGTACATTGCGCTTCCTGAGGAAAGTAATCGCCAGATTTCAATGAAGACCAAGGCAGCTGATAAGGAGGAAAGTAGGGATGCTGTGATGGTTGAGGGAACGTCAAGGCTTGAAATTATAGTTCACCCTGAAGTCCAAAGTCTTGAGACAATGCCTTTGGATAAGTCTACTTCTCAGTGTAAGTTGAATGGAAATAGATTGGCAGTATCATCAGACAGGAAAGTAGTGCTAGGCTTGATAGCTACATCACAATGTCCATGGAGTTTTGATAGATCTTCCACCAAATCTAATTTGTTTGGTGGTACAAATGAAGACAAGGGAGCGAAAGCTGATTCTTTTGCGCGGCCAGACAAGTCTAAAACTGTTGTCAAGGCGTTGAAAAAGAAAAAGGGAAGTTCCCCTACTAATGATAGGTGTCAATTGGTAATTTCAGAAAAGAAGGACTCTTTTGATCCTAATGAAATTGACGAAGACTGGCAAATTGTCCCAAAATCACATAGTTTGAATGTAAATGTTTTTCCTTTTGGTCATAACAGTTTGGTTGGTCATGAGAATGACTCAAATGTGACACGACAAAAAGTGAGGGAAACATTGCGCTTGTTTCAAGCTGTTTCTAGAAAGCTTTTGCATGAAGTAGAAGCAAAGTCAAACGAGCGAGCTAATACTCCTAAGAGGGTTGATTTACAAGCTGCAAAGATCCTTAAGGATAAAGGGAAATATGTCAACACTGGCGACAAGATATTGGGATCTGTCCCCGGGGTTGAAGTTGGTGATGAATTTAAATTCAGGGTGGAGCTTAATATAGTTGGCCTTCATCGCCAGATTCAAGGCGGTATAGATTATGTGAAGCACAATGGTAAGATACTTGCAACGGCTATTGTTGCATCCGGGGGCTATGCTGATGATCTGGATAATTCAGATGTTTTGACATATACAGGGCAGGGTGGAAATGTGATGAGCACTGATAAAGAACCTGAGGATCAGAAGCTTGAGCGGGGCAACCTTGCTCTGAAGAACAGTATTGAGGAAAAGAATCCTGTCAGGGTGATTCGTGGCTATGAATCATCGGAAGGAAGGACATATGTTTATGATGGGCTGTATCGAGTTGACTCATCTTGGCAGGAAATGGGGCCACATGGGAAGCTGGTTTACAGGTTTCGCCTGCTAAGAATCTCTGGTCAACCAGAGCTTGCTTTGAAGGAGGTGAAAAAATCTAAAAAATTCAAAACAAGAGAAGGTCTATGTGTTGATGATATTTCTTATGGTAAAGAGCGAATTCCCGTATGTGCTGTGAACACCATAGATGATGAAAAACCCCCACCATTTACATATATAACTAGCATGATGTATCCCGATGGTTGCAATCTCGCTCCTCCTGAAGGATGTTACTGTACTAATGGGTGTTCTGACTCGGAGAAATGTCCATGTGTAGTAAAAAATGGGGGAGAGATCCCATTCAATCATGATGAGGCTATTGTAGAAGCGAAGCCTCTGGTCTATGAGTGTGGACCTTGCTGCAAGTGCCCTTCGACTTGTCATAACCGAGTCAGCCAACTTGGCATAAAGTTCCAACTTGAAATTTTTAAAACCCCCACAAGGGGATGGGGTGTAAGATCCCTAAATTCCATTCCTTCAGGAAGCTTTATTTGCGAATATATAGGAGAGGTTCTTGAAGATAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGGAATAACTACAACAACAATACACTCTGGGATGGACTTTCTACCCTTATGCCAGATTCACAGATAAGTTCTGCTGAACTTGTGAAAGATGGTGGCTTCACCATTGATGCATTAGAGTTTGCTAATGTGGGGAGATTCATCAACCACAGTTGCTCCCCGAATCTGTATGCCCAGAATGTTCTTTATGATCATCATGACAAGAGGATTCCTCACATAATGTTCTTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGGCGTATGATTATAATTATAAGATAGACCAGGTCTATGATTCCGATGGCAATATAAAAAAGAAGGATTGCTTTTGTGGTTCTTCAGAATGCAGTGGCAGGATGTACTGA 2946 0.4124 MENGDCTFLARPRYKQRKVSAIRDFPEECGPFVSKNAPVSKVDIADSDYANNTVLEDKNDEHVEGGTDRVSKCDKDTQHSELKNDTFLTENLDQAIDCGLMKENSVVSSLQVDEPNLSNYEPANATVVGMDTFDTELERTEKSVKHDSAAGEAPMINGEVPMIDCSKSLSSDINVAYSGACMGEAGTKRYLPRKKVSAVREFPPFCGPHAPRLSMDYCLKGISSLNNNRADQQVLAVDDSLLKKAATTDVKENNTADEYHKRKLVDIVQVDYEGNANLPSENKRGKYIALPEESNRQISMKTKAADKEESRDAVMVEGTSRLEIIVHPEVQSLETMPLDKSTSQCKLNGNRLAVSSDRKVVLGLIATSQCPWSFDRSSTKSNLFGGTNEDKGAKADSFARPDKSKTVVKALKKKKGSSPTNDRCQLVISEKKDSFDPNEIDEDWQIVPKSHSLNVNVFPFGHNSLVGHENDSNVTRQKVRETLRLFQAVSRKLLHEVEAKSNERANTPKRVDLQAAKILKDKGKYVNTGDKILGSVPGVEVGDEFKFRVELNIVGLHRQIQGGIDYVKHNGKILATAIVASGGYADDLDNSDVLTYTGQGGNVMSTDKEPEDQKLERGNLALKNSIEEKNPVRVIRGYESSEGRTYVYDGLYRVDSSWQEMGPHGKLVYRFRLLRISGQPELALKEVKKSKKFKTREGLCVDDISYGKERIPVCAVNTIDDEKPPPFTYITSMMYPDGCNLAPPEGCYCTNGCSDSEKCPCVVKNGGEIPFNHDEAIVEAKPLVYECGPCCKCPSTCHNRVSQLGIKFQLEIFKTPTRGWGVRSLNSIPSGSFICEYIGEVLEDKEAEQRTGNDEYLFDIGNNYNNNTLWDGLSTLMPDSQISSAELVKDGGFTIDALEFANVGRFINHSCSPNLYAQNVLYDHHDKRIPHIMFFAAENIPPLQELAYDYNYKIDQVYDSDGNIKKKDCFCGSSECSGRMY* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0146 981 SMART preset_2 701 792 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g0146 981 Pfam SAD/SRA domain 533 679 IPR003105 -
Lja2g0146 981 Pfam SET domain 819 951 IPR001214 GO:0005515
Lja2g0146 981 SUPERFAMILY SET domain 691 957 IPR046341 -
Lja2g0146 981 CDD SET_AtSUVH-like 725 952 - -
Lja2g0146 981 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 407 980 - -
Lja2g0146 981 ProSiteProfiles SET domain profile. 808 951 IPR001214 GO:0005515
Lja2g0146 981 Gene3D SET domain 696 981 IPR046341 -
Lja2g0146 981 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 389 981 IPR025794 GO:0016571
Lja2g0146 981 SMART G9a_1 529 679 IPR003105 -
Lja2g0146 981 SMART set_7 808 957 IPR001214 GO:0005515
Lja2g0146 981 ProSiteProfiles YDG domain profile. 534 675 IPR003105 -
Lja2g0146 981 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 407 980 - -
Lja2g0146 981 Pfam Pre-SET motif 704 800 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g0146 981 ProSiteProfiles Post-SET domain profile. 965 981 IPR003616 -
Lja2g0146 981 Gene3D - 516 695 IPR036987 -
Lja2g0146 981 SUPERFAMILY PUA domain-like 515 688 IPR015947 -
Lja2g0146 981 ProSiteProfiles Pre-SET domain profile. 745 805 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g0146 981 SMART PostSET_3 965 981 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0146 Lja-Chr2 1217985 1225853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0146 473 978 Su(var)3-9 homologs AT5G04940 41.491 3.37e-118 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g0146 SAD_SRA 1.5e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0146 K11420 - gmx:100803378 1126.31