Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0144 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGACCACCGGAGAAGCCAATACTATGCAATGCATGTGGGTCGCGGTGGAGGACAAAGGGAACTCTTGTAAATTATACCCCTTTACATGCTCGGCCAGAAACTGATGATTATGAGGATCAAAAGGTTTTCAGAGTAAAAAGCATATCCTTAAATAAGAACAAAGAGGGGAAACCACTCAAAAGAAAGCAGAACCATGACAATTTAGTATCTGGAGGGGTTGCACCTTATTACAACCAGGGATTCCCAAAGGTTGTCGATGAAGATACAAGCAATCGATCAAGTTCAGGATCAGCTATCTCTAACTCGGAGAGCTGTGCACAATTTGGTGGCACTGAGGCTAGTGATCTGACAGGTCCTGCTCAATCAGTGGTCTGGGAGACCATGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTCACACAAGATTTATGCACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCTATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTCTTTAGGCATCCTAGCTGTATAGCTCGTGACGAAGAGTCTGAAGCGAGCTCTCTTTCAGTTGATAATAAACAGTGCCCAATAAGTGAGGCATATTCATATTCTGGCGCCATGCTTGTTCATAATAGTTCCAGTCCCATGAACTTCTCATCTCAAGGTGTTGAAAAGGTCAGGAACTCTGCTGACCATGGAATGCACCAGGAGCAACTTAAAAGTGACAAGTCACAGCTTGAAAGGGTGCAAATGCTTGGAAATCATGATTCACCACTGTGCTTAATAGATTTAAATGATGTAGTAAACTATGAAGAGTTCTTGAGAATCTTAACAAATGAAGAGCAGCAGCAATTACTGAAGTTTCTTCCTGTGGTTGATACTGCTAAACTTCCAGATAGCCTTAAAGCCATGTTCGATAGCTCTCAATTCAAAGAGAACTTAACTTATTTTCAGCAGCTTCTCTCAGAAGGTGTCTTTGATATCTCTTTGTCAGGAGCAAAACCTGAAGATTGCAAGACTCTGAAAAGATTTGCATTGTCCAATCTGTCAAAATTGAAATGGGTAGAACACTACCATTTTCTTAAGAGATGTAAAAGGAGACCTGGAAAATCTGGTACTCCAGGATCTACTAGTACGTCATCAACTAATGTTGCGAACATCAAGAGAGTGCGTGATAGCTGGAATCAAAACTTTCCAGAGTTGAAGCCGATAATGAGAAACCCCAAAAGGGTGATCACAAAAGCTGGTTGTGAGGGCAAAGAAGTTGTAGAAGATGGCGCTAGCAATAGTCCAAAAAGCCTGTTTCCTTTGCCTCGTGCTGCTAGCTCGCTCTTCCTGGATTCTTTAAACTTTGCTGAAGAGAGTTCTGATCAGGATCTACTGCTAGATGTGCCATCTAACAGTTCTTTTCCACAGGCAGAGCTTCTATGCCCAACTTTAAGCTTTGGCGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACTCACATCTTGTCCACCGTTAA 1623 0.4258 MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLVNYTPLHARPETDDYEDQKVFRVKSISLNKNKEGKPLKRKQNHDNLVSGGVAPYYNQGFPKVVDEDTSNRSSSGSAISNSESCAQFGGTEASDLTGPAQSVVWETMVPSKKRTCVGRPKPSSVEKLTQDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSMLFRHPSCIARDEESEASSLSVDNKQCPISEAYSYSGAMLVHNSSSPMNFSSQGVEKVRNSADHGMHQEQLKSDKSQLERVQMLGNHDSPLCLIDLNDVVNYEEFLRILTNEEQQQLLKFLPVVDTAKLPDSLKAMFDSSQFKENLTYFQQLLSEGVFDISLSGAKPEDCKTLKRFALSNLSKLKWVEHYHFLKRCKRRPGKSGTPGSTSTSSTNVANIKRVRDSWNQNFPELKPIMRNPKRVITKAGCEGKEVVEDGASNSPKSLFPLPRAASSLFLDSLNFAEESSDQDLLLDVPSNSSFPQAELLCPTLSFGAQASTSSSSAYSHLVHR* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0144 540 Pfam Asx homology domain 283 367 IPR028020 -
Lja2g0144 540 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lja2g0144 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 539 IPR044589 -
Lja2g0144 540 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 539 - -
Lja2g0144 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lja2g0144 540 MobiDBLite consensus disorder prediction 411 425 - -
Lja2g0144 540 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lja2g0144 540 MobiDBLite consensus disorder prediction 406 425 - -
Lja2g0144 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 406 IPR044867 -
Lja2g0144 540 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Lja2g0144 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lja2g0144 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Lja2g0144 540 Gene3D - 290 387 IPR038108 -
Lja2g0144 540 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0144 Lja-Chr2 1194309 1200940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0144 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.731 2.36e-155 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja2g0144 ASXH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0144 - - gmx:100803914 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0144 2 1194309 1200940 Lja4g2610 4 34454990 34461735 PCT