Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0133 ATGCACGGAGAAAGTACCTACGATTCCGATTTGGCCATCTTAGAATCCATTCGCCGCCACTTGCTTGGAGAATCCGATATATGCATATTCGGAGCCCCGATTTCTAATTCGGGTAACCCGCCGGTTTACGTTCGGAGCTCCAGTTTCAGCAAACTGTACCCGTGTCTGACTGACAATTGGGGCGAGCTTCCACTCAAGGAAGACGATTCAGAGGATATGATGCTCTACGGCGTGCTTCGCGACGCCGTCAACGAGGGGTGGGTCCCATCTCTCGATTCATCGGGTTTTCTTCCCGTCAAATCTGAACCGGAGCTTTTCCCGGCAGTGCAGAGCCCACCGGAGCGGGTTGTTCCGGCTCCGGTGATTCCTAAGGAGGAAGTCATGCCGGCGGCTGCTCCGGCGAAGGGGAAGCATTACCGCGGCGTGAGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGTGATCCGGCGAAGAATGGAGCTAGGGTTTGGCTCGGAACGTTTGAAACGGCTGAGGACGCTGCGTTGGCTTACGATCGGGCTGCGTACAGGATGCGCGGGTCGCGTGCTCTGCTGAATTTCCCTCTCCGGGTTAACTCTGGTGAGCCAGACCCGGTTCGTGTGCCGTCGAAGCGGTCATTGTCTTCTTCTTCTTCTTGTTCGTCGTCGTCATCGTCGGAGAGTGGTTTGACGGCGAAGCGGAGGAAGAAGGTGGTGGGGCCAACGGTGCCTGTGGTGACTGCTCAAGTGGGATTAAAAACAGAACAAGTGGAGGAGTCAAGTTGCAAAGTGCACACGTGGAGAACAGTTATTGGTGAATTGAAGGCTGACGTGGAATGCAACTTGCTTATGTAA 858 0.5559 MHGESTYDSDLAILESIRRHLLGESDICIFGAPISNSGNPPVYVRSSSFSKLYPCLTDNWGELPLKEDDSEDMMLYGVLRDAVNEGWVPSLDSSGFLPVKSEPELFPAVQSPPERVVPAPVIPKEEVMPAAAPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVPSKRSLSSSSSCSSSSSSESGLTAKRRKKVVGPTVPVVTAQVGLKTEQVEESSCKVHTWRTVIGELKADVECNLLM* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0133 285 SUPERFAMILY DNA-binding domain 138 198 IPR016177 GO:0003677
Lja2g0133 285 Gene3D AP2/ERF domain 137 199 IPR036955 GO:0003700|GO:0006355
Lja2g0133 285 PANTHER DNA-BINDING DOMAIN 26 219 IPR044808 GO:0003700|GO:0009873
Lja2g0133 285 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Lja2g0133 285 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Lja2g0133 285 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Lja2g0133 285 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
Lja2g0133 285 MobiDBLite consensus disorder prediction 203 237 - -
Lja2g0133 285 Pfam AP2 domain 138 188 IPR001471 GO:0003700|GO:0006355
Lja2g0133 285 CDD AP2 137 196 IPR001471 GO:0003700|GO:0006355
Lja2g0133 285 PANTHER BNAANNG21280D PROTEIN 26 219 - -
Lja2g0133 285 MobiDBLite consensus disorder prediction 211 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0133 Lja-Chr2 1117707 1119283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0133 9 241 AP2-EREBP Transcription Factor Family AT4G17500 60.392 5.89e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g0133 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0133 K09286 - mnt:21406767 310.457