Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0132 ATGGCCAACCCTGATGAAGTCTGTGCCCTTTACCGCATCAAACTGCACCTCCTCGGCGAACTCTCTCCCATCCCGATCCGCACCACCCACACCCACACCCACACCCACGACGACGACTTCGCCTTCCAGTTCGATCTACCAAACCCTAACTCATCCCAATCTCAATCTCAATCTCAATCTTTCACTTCCGATCCAATCTTCGAATTCGACTGCAAACCCATAATATTTGACATAGAAACCGAATCTCCTAAACCTATACCCGTCCACAAGAAGCAACCTGCACTCAGTCGACGAAAATCGCTCGAGATTTCTCTTCCCAAGAAAACAACCGAGTGGATCCAGTTCGGGGAAGTAGCACCAGAGCCTTCTGAAGCTTCAGCGAAGCCTGAGGTGGAGGTGGAGAAGAAGCACTACAGAGGAGTCCGTCAAAGACCGTGGGGCAAGTTCGCCGCCGAGATCCGGGACCCGAACAAGCGCGGATCTAGAGTTTGGCTCGGAACATTCGACACCGCCATCGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTTACCTTTCGCGGCTCGAAGGCGGTTCTCAACTTCCCGCTTGAAGCCGGTGTCGTTGACCGGAAGCACAGTCGTGAGGAGGAGGCGGAGGAAGCGGTGAAGAGGCAAAAGACGGTGGAATCGGAGATTATTAACCGTATAAGGGATACTCTGTTAACGCCACCGTCTAGCTCCGGTGATGTGAAGGGTTTATTCACGGTGGAATCGGATATTAATAGGATAAAGGAAACGTCGTTAACGCCGTCTAGCTGGACTGGGTTCTGGGACAATTTCACGGTGGCGCCTTTGTCGCCGTTATCTCCCCACCCAGCTTTGGGATTTCCGCAGCTAATGGTTGTGTGA 888 0.5315 MANPDEVCALYRIKLHLLGELSPIPIRTTHTHTHTHDDDFAFQFDLPNPNSSQSQSQSQSFTSDPIFEFDCKPIIFDIETESPKPIPVHKKQPALSRRKSLEISLPKKTTEWIQFGEVAPEPSEASAKPEVEVEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFTFRGSKAVLNFPLEAGVVDRKHSREEEAEEAVKRQKTVESEIINRIRDTLLTPPSSSGDVKGLFTVESDINRIKETSLTPSSWTGFWDNFTVAPLSPLSPHPALGFPQLMVV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0132 295 MobiDBLite consensus disorder prediction 39 62 - -
Lja2g0132 295 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Lja2g0132 295 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Lja2g0132 295 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Lja2g0132 295 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 239 - -
Lja2g0132 295 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700|GO:0006355
Lja2g0132 295 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Lja2g0132 295 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 239 - -
Lja2g0132 295 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Lja2g0132 295 MobiDBLite consensus disorder prediction 45 62 - -
Lja2g0132 295 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Lja2g0132 295 SUPERFAMILY DNA-binding domain 137 196 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0132 Lja-Chr2 1104289 1105543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0132 1 295 AP2-EREBP Transcription Factor Family AT5G47230 43.614 2.30e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g0132 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0132 K09286 - gmx:100808173 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0132 2 1104289 1105543 Lja2g0132 2 1104289 1105543 ECH