Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0127 ATGACTCTTGGAAAGGAAGACGATTTGGGCTTAAGCCTGAGCCTGAGCCTGAGCTTCCCTCAGAAAAATCCCCCAAACCCAAACCCTCTGCATCTCAATCTCATGTCCTCTTCCTCTGCCTACAATCCTCTCAAACCCACTTGGACTCAGCCTTTCACCTCTTCAGATCGAGATTCGGAAACATGCAGGGTTGGCGAAGGTGGTTTTTCCCTCGGCGGAATCGGAATCGATGTGAATCGGTTACCGTCCGGCGTCGATTGCGAAGAGGAAGCAGGGGTTTCATCTCCGAACAGCACCGTCTCCAGCGTGAGCGGCAAGCGGAGCGAGAGGGAAGGCAATGGCGAAGAGCGTGACGTGGAGGAGAGAGATTGCTCCAGAGGAATCAGTGATGAAGATGATGACGGTGGTGAAACTTCCAGGAAAAAACTCAGACTCTCCAAAGATCAAGCCATTGTTCTTGAAGAAAGCTTCAAAGAACACAACACTCTTAACCCTGTAAGTAGCAGAGTTACTCTGTTTCAAAAAAAAAATCATCTAGATTTTGTGAAGTTTTTGTTCTCATTTTTTCCGCCATGGATCTGTTTGCAGAAACAAAAGATGGCACTGGCAAAGCAATTAGGCCTTCGAGCACGACAAGTTGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACGGAGGTAGATTGTGAGTTTCTGAAACGGTGCTGCGAGAATCTGACGGAGGAGAACAGAAGGTTGCAGAAGGAGGTTCAGGAGCTCAGAGCACTCAAGCTTTCCCCGCAGTTCTACATGCAGATGACCCCACCGACCACTCTCACCATGTGCCCATCCTGCGAGCGCGTGGCAGTTCCGCCCTCCGCGGTTGATCCATCCACGCGCCACCATCATCCCATGTCGGCTCCTAATAATCACGCGCGTCCCTTCTCGGTTGGCGCGTGGGCCTCCACTGCTCCCATTTCACACAGGCCGTTCGATGTGCTTCGTCCTAGATCTTGA 1008 0.5119 MTLGKEDDLGLSLSLSLSFPQKNPPNPNPLHLNLMSSSSAYNPLKPTWTQPFTSSDRDSETCRVGEGGFSLGGIGIDVNRLPSGVDCEEEAGVSSPNSTVSSVSGKRSEREGNGEERDVEERDCSRGISDEDDDGGETSRKKLRLSKDQAIVLEESFKEHNTLNPVSSRVTLFQKKNHLDFVKFLFSFFPPWICLQKQKMALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPSAVDPSTRHHHPMSAPNNHARPFSVGAWASTAPISHRPFDVLRPRS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0127 335 CDD homeodomain 140 228 IPR001356 GO:0003677
Lja2g0127 335 MobiDBLite consensus disorder prediction 108 141 - -
Lja2g0127 335 CDD bZIP 220 259 - -
Lja2g0127 335 Pfam Homeobox associated leucine zipper 227 261 IPR003106 GO:0006355|GO:0043565
Lja2g0127 335 PRINTS Lambda-repressor HTH signature 198 207 IPR000047 GO:0003677
Lja2g0127 335 PRINTS Lambda-repressor HTH signature 207 223 IPR000047 GO:0003677
Lja2g0127 335 Pfam Homeodomain 197 225 IPR001356 GO:0003677
Lja2g0127 335 ProSitePatterns 'Homeobox' domain signature. 202 225 IPR017970 GO:0000981|GO:0006355
Lja2g0127 335 Coils Coil 226 263 - -
Lja2g0127 335 ProSiteProfiles 'Homeobox' domain profile. 136 227 IPR001356 GO:0003677
Lja2g0127 335 SMART HOX_1 138 231 IPR001356 GO:0003677
Lja2g0127 335 PANTHER - 196 326 - -
Lja2g0127 335 PANTHER - 7 166 - -
Lja2g0127 335 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 196 326 - -
Lja2g0127 335 SUPERFAMILY Homeodomain-like 197 235 IPR009057 -
Lja2g0127 335 Pfam HD-ZIP protein N terminus 4 111 IPR006712 GO:0005634
Lja2g0127 335 MobiDBLite consensus disorder prediction 92 107 - -
Lja2g0127 335 MobiDBLite consensus disorder prediction 16 38 - -
Lja2g0127 335 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 7 166 - -
Lja2g0127 335 Gene3D - 144 225 - -
Lja2g0127 335 SMART halz 227 270 IPR003106 GO:0006355|GO:0043565
Lja2g0127 335 MobiDBLite consensus disorder prediction 87 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0127 Lja-Chr2 1080962 1082957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0127 1 335 Homeobox Transcription Factor Family AT5G47370 54.571 3.81e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja2g0127 HD-ZIP_N 8.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0127 K09338 - gmx:100787231 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0127 2 1080962 1082957 Lja4g2585 4 33330791 33332846 PCT