Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0124 ATGGAAGAAGATACTGAAGTCCAACCAACCAGTACCACTTCCTCCACTGAAGAAGAAGAAGTGTGTGTTGAGAACAACAACAAGAACAAGAAGTATCGTGGGGTCCGCATGCGTCAGTGGGGTAGATGGGTTTCAGAAATCAGAGAGCCCAAGAAGAAGTCTAGAATCTGGCTCGGCACTTTTCCCACTCCAGAAATGGCGGCCCAAGCCCATGACGTGGCGGCCCTCGCCATCAAAGGCCCATCCGCTTTCCTCAATTTCCCCGAATCAGCCTCACAACTTCCACGGCCCGCCACCACTTCCCGGAAAGATATCCAAGCCGCCGCCGCCAAGGCAGCTACCATGAATTACAATCACCGTGAAGCCCAAGCCCAGGCCCAAACAAGCCCATTCATGTGTTCTTCAAATTCATCATCGTTAACTTGCGATGATGACTCGCTCTTCGACCTTCCTGATCTCTCTTTCGGCTCAAGCCACAGTGGAGGTGAGCTTCATTACTCGGCGCCGTGGCTCGGAGCCGGAGCTGAACACATAGACTCGGGTTTTCGGCTAGAGCTGGAAGACCCTTTCCCGTGGAAGTGCTACTAG 588 0.5323 MEEDTEVQPTSTTSSTEEEEVCVENNNKNKKYRGVRMRQWGRWVSEIREPKKKSRIWLGTFPTPEMAAQAHDVAALAIKGPSAFLNFPESASQLPRPATTSRKDIQAAAAKAATMNYNHREAQAQAQTSPFMCSSNSSSLTCDDDSLFDLPDLSFGSSHSGGELHYSAPWLGAGAEHIDSGFRLELEDPFPWKCY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0124 195 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Lja2g0124 195 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Lja2g0124 195 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Lja2g0124 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 160 - -
Lja2g0124 195 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Lja2g0124 195 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Lja2g0124 195 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Lja2g0124 195 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Lja2g0124 195 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Lja2g0124 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 14 160 - -
Lja2g0124 195 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0124 Lja-Chr2 1034331 1035339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0124 27 190 AP2-EREBP Transcription Factor Family AT2G44940 46.305 2.36e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g0124 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0124 - - gmx:100101914 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0124 2 1034331 1035339 Lja4g2580 4 33107793 33108644 PCT