Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0123 ATGGAAGAAGACACTGAGGTTCAGACAACCACTTTGTCCACTGAAGAAGAAGCAGTGTGTGTTGAGGACAAGAAGTATCGAGGGGTACGCAAGCGTCATTGGGGCAAGTGGGTTTCAGAAATCAGAGAGCCCAAGAAAAAGTCCAGAATCTGGCTTGGCACTTTCCCTACTGCAGAGATGGCTGCCCAAGCCCATGATGCTGCGGCCCTTGCCATCAAAGGCCCCTCCACCTTCCTCAACTTCCCTGAGTTAGCCTCACAAATTCCACGCCCCGCCAGCACTTCCCGTAAAGACATCCAAGCCCTCGCCGCCAAGGCAGCCGCAATGAATTACCACCAAGCCCATGCCGAAAACACTTGTGAAGCCCAAGCCCAAATAAGCATGTCTGTGTCTTCCTCCCATTCCATTGATGCACACCAATCTTCAGGTTCATCGTCATTGTTAAATGGTGAGGTTGACACGATATTTGACCTACCTGATCTCTCACTCGACTCAAATCATACAGATTTAGGTTTTTGGCTGGAACTGGAGGATGACCCTTACCCGTGA 549 0.5046 MEEDTEVQTTTLSTEEEAVCVEDKKYRGVRKRHWGKWVSEIREPKKKSRIWLGTFPTAEMAAQAHDAAALAIKGPSTFLNFPELASQIPRPASTSRKDIQALAAKAAAMNYHQAHAENTCEAQAQISMSVSSSHSIDAHQSSGSSSLLNGEVDTIFDLPDLSLDSNHTDLGFWLELEDDPYP* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0123 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 22 169 - -
Lja2g0123 182 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lja2g0123 182 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Lja2g0123 182 ProSiteProfiles DM13 domain profile. 128 182 IPR019545 -
Lja2g0123 182 PIRSF PTI6 3 171 IPR017392 GO:0003700
Lja2g0123 182 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Lja2g0123 182 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Lja2g0123 182 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Lja2g0123 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 169 - -
Lja2g0123 182 CDD AP2 24 84 IPR001471 GO:0003700|GO:0006355
Lja2g0123 182 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Lja2g0123 182 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0123 Lja-Chr2 1030968 1031516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0123 19 173 AP2-EREBP Transcription Factor Family AT2G35700 54.194 1.84e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g0123 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0123 - - gmx:100101914 159.073