Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0122 ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAACAGTCTGATGTTATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGCCAACAACCTTCCATTGTTCGCTTGACAAGGCCGACTCGCCCTGACAAGGCTCGTCGCTTGGGCTATAAGGCTAAGCAGGGTTATGTGGTTTACCGGGTTCGTGTTCGGAGGGGTGGTAGAAAGAGACCAGTTTCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGTGTTACCCAACTGAAATTTCAGCGGAGCAAGAGGTCCGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTCAGGGTTCTCAATTCGTACTGGGTCAATGAGGACTCCACTTATAAATACTTTGAGATAATTCTGGTGGATATTGCTCATACTGCAATTAGAAATGACCCAAGAATCAACTGGCTCTGCAAGCCAGTGCACAACCACAGGGAGCTGCGCGGGAACACCTCTGCAGGGAAAAGCAACAGGTGTTTACGGGGCAGAGGTCATCGGTACCACAAAGCACGACCATCCCGCAGGGCAACCTGGAAGAGAAACAACTCCCTATCCCTTCGCCGTTACCGCTGA 615 0.5187 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDIAHTAIRNDPRINWLCKPVHNHRELRGNTSAGKSNRCLRGRGHRYHKARPSRRATWKRNNSLSLRRYR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0122 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Lja2g0122 204 MobiDBLite consensus disorder prediction 161 191 - -
Lja2g0122 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Lja2g0122 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lja2g0122 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Lja2g0122 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lja2g0122 204 MobiDBLite consensus disorder prediction 173 190 - -
Lja2g0122 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lja2g0122 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0122 Lja-Chr2 1006633 1008176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0122 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 89.706 9.28e-123 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0122 K02877 - gmx:100810310 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0122 2 1006633 1008176 Lja2g0122 2 1006633 1008176 ECH
Lja2g0122 2 1006633 1008176 Lja4g2574 4 32954985 32957124 PCT