Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0111 ATGGACGAAGAGACCGAAGCGCCGGACACCCGTGAACTCTACGCACTCCTCAACTTGTCGCCGGAAGCTTCCGATGAAGAAATTCGCAAAGCCTATCGTCAATGGGCACAGGCTTATCACCCTGACAAGTACCAAGCTCCTCACATGAAGGATATTGCTACTGTGAACTTTCAACGCGTCTGTGAAGCGTATGAGATTCTCTCGGATCCAAATAAGAGGCAAATTTATGATATCTATGGCATGGAAGGGTTAACCTCTGGTTTGGAACTCGGTCCGACACTCGATAAAGCCCAAGAGATCAAGGCAGAGCTCGAGAGGTTGAAGAAGATGAAGGAGCGGGAAAAGATGGCGGCTCATTTCCAATCATCGGGTACAATTCTGGCAAACATGTCTTTGCCTGAATTTCTACGGGGTGATAGCCTCTTCAAAGGAATGGCTATGACAAGTGAAATTCAGTCTCAGTTATCCAAGCGTAATGCTGTTACATTAAGTGGCAATTTAGCAGTTGATGGGCGTGACGGTGGAGGGGCTGCTACTGCTGTATTTAGGCATCAACTGTCAGAAGTTTCGTCAATAGAATTTGTAGGTTCAGCTGGTTTACGTGCACTAGTTGGGGTGCAAACATCTCGTAATATATCATTACACTCAACTGCAACAATGGGCATAGCCATGTCTTTGAAAGATGGTTCATTGAATCTTTCGAATCTATGGACCCGCCAACTGTCAGATACAGCAAGTGGACATATACAGCTTACTTTGGGACCACAATCATCTGTAGCTGTAGGGTGGCAAAAGAAAGATGAGAGAGGGTCTGCCTCTGGTGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGCTCATTATAGTCATCGATTTTCTTCTAAATCTCTTGGCTGCATCGGGGGAAGAGTTGGGAGTTCTTCCCTTGAGATTGAAGTCGGTGGTGGGAGGAAGTTATCCAAATTTAGCACTGTCCGTTGGATGTATGTAATAGGAATTCAGGGTATTTCCTGGAAGTTTGAACTCTATCGCGGGGGTCAGAAGTTAATATTTCCTATTTTGCTATCAAAGCATTTGAACCCTGTGTTTGCTACCGGAGCATTCGTTGTTCCAGCATCTCTTTACTTTGTTGTGAAGAAATTTTTAATTAAGCCATATTACCTTAAAAGGAATAAGCAGAAGGCTTTAGAGAAGGAAGAGAAAACTTCTACTCAGGTTCAAGAAGCAAGGGCGGCAGCAGAGAAATCTCAGAAACTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCGTTATATGGGAATCAAATTTTTTTGGACAATTTGCGTTCAAGTGAAACGAGTTTCGAGTCAACTTCAGAAATCATTGATGTTACAACACCTATGAATTTTCTAGTTAATGATTCTGGCCAACTTAAGCTTCATGAAGGTGTAAAAAAATCAGGAATCATGGGCTTTTGTGATCCATGTCCAGGAGAACGTAAACAGTTGTATGTAGAGTACGTTAATGCTGGTAATCAACACAAGGTTTGGGTTGGTGATTATGAAGAATTACTGATACCTCAGGGAACCCATATGATATAA 1620 0.4253 MDEETEAPDTRELYALLNLSPEASDEEIRKAYRQWAQAYHPDKYQAPHMKDIATVNFQRVCEAYEILSDPNKRQIYDIYGMEGLTSGLELGPTLDKAQEIKAELERLKKMKEREKMAAHFQSSGTILANMSLPEFLRGDSLFKGMAMTSEIQSQLSKRNAVTLSGNLAVDGRDGGGAATAVFRHQLSEVSSIEFVGSAGLRALVGVQTSRNISLHSTATMGIAMSLKDGSLNLSNLWTRQLSDTASGHIQLTLGPQSSVAVGWQKKDERGSASGEVKFGTGSFETSAHYSHRFSSKSLGCIGGRVGSSSLEIEVGGGRKLSKFSTVRWMYVIGIQGISWKFELYRGGQKLIFPILLSKHLNPVFATGAFVVPASLYFVVKKFLIKPYYLKRNKQKALEKEEKTSTQVQEARAAAEKSQKLQQNVANRKRNKQLETGGLVIMRALYGNQIFLDNLRSSETSFESTSEIIDVTTPMNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGERKQLYVEYVNAGNQHKVWVGDYEELLIPQGTHMI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0111 539 Coils Coil 94 117 - -
Lja2g0111 539 Pfam DnaJ domain 13 77 IPR001623 -
Lja2g0111 539 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Lja2g0111 539 PRINTS DnaJ domain signature 52 72 IPR001623 -
Lja2g0111 539 PRINTS DnaJ domain signature 14 32 IPR001623 -
Lja2g0111 539 PRINTS DnaJ domain signature 32 47 IPR001623 -
Lja2g0111 539 PRINTS DnaJ domain signature 72 91 IPR001623 -
Lja2g0111 539 SMART dnaj_3 11 72 IPR001623 -
Lja2g0111 539 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Lja2g0111 539 PANTHER CHAPERONE PROTEIN DNAJ 13 1 538 IPR042162 -
Lja2g0111 539 Coils Coil 397 430 - -
Lja2g0111 539 Gene3D DnaJ domain 3 90 IPR036869 -
Lja2g0111 539 SUPERFAMILY Chaperone J-domain 8 83 IPR036869 -
Lja2g0111 539 CDD DnaJ 12 69 IPR001623 -
Lja2g0111 539 Pfam DnaJ-like protein C11, C-terminal 386 533 IPR024586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0111 Lja-Chr2 872410 882787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0111 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 1.55e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0111 K09531 - gmx:100817782 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0111 2 872410 882787 Lja2g0111 2 872410 882787 ECH