Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0109 ATGGCATCTCTCTTAATTCTCATTCTGCAATTTCTTCTGGTTATTTTCACTTACATATTCTATGCAGCTACAACCGTGACATGCGTACACCACCACCACGACATTGCCTTCAATCCACTGTCTTTAAAGAAGAACCACAGTTGGATCGGACCGGTCGGTCGCCGTGTAATCACAGTTGACGTTAACGGCGGTGGCCAGTTCCAGTGCGTCCAAGACGCCGTCAATGCTGTGCCGGAAAACAATAGAATGAACGTCCTCATTCAAATCAGCGCCGGTTACTACATAGAGAAGGTGGTGGTGCCGGCGACAAAGCCCTACATTACATTTCAGGGCGAGGGAAAGGGAGTGACGGTGATTGAGTGGCATGATAGAGCAAGTGATCCTGGTCCTAACGGACAACAGTTGCGAACTTACAGAACTGCTTCTGTAACAGTTTTTGCTAACTATTTTTCTGCTAGGAATATCAGCTTCAAGAACACCGCACCTGCACCAATGCCAGGGATGCAGGGATGGCAAGCGGCGGCGTTTCGAATATCGGGGGACAAAGCATTCTTCTCCGGGTGTGGCTTCTACGGTGCGCAGGACACGCTTTGTGACGATGCCGGCAGGCACTATTTCAAGGAATGCTATATTGAGGGCTCTATTGATTTCATTTTTGGCAATGGAAGGTCCATGTACAAGGATTGCCAGCTTCATTCAATAGCAACGAGGTTCGGTTCAATAGCAGCACACGATAGGAAGTATCCAAACGAGAAGACAGGCTTCACGTTCGTAAGGTGCAGGGTGACAGGTACAGGCCCAATATATGTGGGCCGAGCAATGGGCCAGTACTCCAGAATTGTGTACTCCCACACATACTTCGATGATATAGTTGCACATGGTGGTTGGGATGATTGGGACCATGCCAACAACAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGGCCTGGAGCAGGGGCTGTGCGTGGGGTCTCATGGGCCAGAGAGTTAGATTTTGAATCGGCCCATCCATTTCTGGTTAAGAGCTTCGTTAATGGAAGACACTGGATAGCACCCTCAGATGCTTAG 1077 0.4912 MASLLILILQFLLVIFTYIFYAATTVTCVHHHHDIAFNPLSLKKNHSWIGPVGRRVITVDVNGGGQFQCVQDAVNAVPENNRMNVLIQISAGYYIEKVVVPATKPYITFQGEGKGVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCQLHSIATRFGSIAAHDRKYPNEKTGFTFVRCRVTGTGPIYVGRAMGQYSRIVYSHTYFDDIVAHGGWDDWDHANNKNKTVFFGVYKCWGPGAGAVRGVSWARELDFESAHPFLVKSFVNGRHWIAPSDA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0109 358 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Lja2g0109 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 357 - -
Lja2g0109 358 Pfam Pectinesterase 57 349 IPR000070 GO:0030599|GO:0042545
Lja2g0109 358 Gene3D - 53 357 IPR012334 -
Lja2g0109 358 PANTHER PECTINESTERASE 68-RELATED 29 357 - -
Lja2g0109 358 SUPERFAMILY Pectin lyase-like 53 355 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0109 Lja-Chr2 828873 831441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0109 5 358 Carbohydrate Esterase AT5G47500 71.788 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0109 - - cam:101501763 638.647