Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0105 ATGGAGAGGTACAAATGCAAGCTTTGCTCCAGAAAATTCATCAATGGCAAAGCACTAGGTGGTCACATGAAGGCTCACTTAGCCCCACTTCCCCTTCCTCCCAAGCCTCAACCACTCTCTAACCATAACCACACTGCATCCTTCTCATATTCACTTTCTTCTTCTGAAGAAGAAGAAGAGGCAGAGGAAAAGCCTCTGATTTATGGGTTGAGAGAAAACCCAAAAAAAAGTTTCAGACTTTCGGATCCTGAGTCTGTTGTGCAAGACAGAGAGAGCGAGACTGAGTCAAAGAACCCAACTCGGAGACGATCCAAACGAACACGAAAACCTCTTCAGAATCCTAAACTGATGAGCTTCATGGATTCACCAGAGCCTGTGAGCTCTGTTTCTGATACTTCCCCTGACGAAGATGTTGCCATGTGCCTCATGATGCTCTCCAGAGACAGTTGGAGAATCAGCAACAATGTTGATGTTAACGTTGTTGTTGTTGTCAAAGAAGAAGAAGAAATGAAATCAGAGGGGTTTCCTGAGATCAACTTCAGGAAGGTTCGTGGGAAGCACCAATGTGAAAACTGTGGGAAGAAGTTTCGATCTTCTGGAGCATTGGGGAGTCACAAAAGCATTTGTGTTGATGATGATGAAGAAGTGAGTGATGATAAAATCTTCCAATGCCCATTTTGTGAGAAGGTTTTTGGGTCTGGTCAAGCACTTGGTGGACACAAGAGATCTCACCTTTACCCATCTTCATCTTCAACTGCTAGTGGGTTCAAACAGACCTTCTTCGATCTCAACTTGCCAGCTTCACCAGAAGAAGATGATGACCTCAGTGTTGTTTCTGATGCCTGA 846 0.4444 MERYKCKLCSRKFINGKALGGHMKAHLAPLPLPPKPQPLSNHNHTASFSYSLSSSEEEEEAEEKPLIYGLRENPKKSFRLSDPESVVQDRESETESKNPTRRRSKRTRKPLQNPKLMSFMDSPEPVSSVSDTSPDEDVAMCLMMLSRDSWRISNNVDVNVVVVVKEEEEMKSEGFPEINFRKVRGKHQCENCGKKFRSSGALGSHKSICVDDDEEVSDDKIFQCPFCEKVFGSGQALGGHKRSHLYPSSSSTASGFKQTFFDLNLPASPEEDDDLSVVSDA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0105 281 Pfam C2H2-type zinc finger 222 245 - -
Lja2g0105 281 Pfam C2H2-type zinc finger 3 28 - -
Lja2g0105 281 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lja2g0105 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lja2g0105 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 244 IPR013087 -
Lja2g0105 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 216 IPR013087 -
Lja2g0105 281 MobiDBLite consensus disorder prediction 64 100 - -
Lja2g0105 281 Pfam Zinc finger, C2H2 type 187 206 IPR013087 -
Lja2g0105 281 SUPERFAMILY beta-beta-alpha zinc fingers 187 244 IPR036236 -
Lja2g0105 281 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Lja2g0105 281 MobiDBLite consensus disorder prediction 29 133 - -
Lja2g0105 281 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 281 - -
Lja2g0105 281 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 281 IPR044303 GO:0006355
Lja2g0105 281 Gene3D Classic Zinc Finger 184 244 - -
Lja2g0105 281 SMART c2h2final6 222 244 IPR013087 -
Lja2g0105 281 SMART c2h2final6 187 207 IPR013087 -
Lja2g0105 281 SMART c2h2final6 4 26 IPR013087 -
Lja2g0105 281 MobiDBLite consensus disorder prediction 39 54 - -
Lja2g0105 281 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0105 Lja-Chr2 806253 807098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0105 1 278 C2H2 Transcription Factor Family AT3G60580 37.931 9.72e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g0105 zf-C2H2_6 5.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0105 - - gmx:100815124 318.931