Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0080 ATGAACACCTTTTCACATGTTCCTCCGGGCTTTCGCTTCCATCCCACTGATGAAGAACTAGTTGATCACTACCTCAGGAAAAAAGTAGCTTCTAAGAGGATCGAACTAGATGTTATAAAAGATGTTGATCTTTATAAAATTGAGCCATGGGATCTTCAAGAATTATGCAAGCTAGGAACTGATGAACAAAATGAATGGTATTTCTTCAGTCATAAAGATAAGAAGTATCCAACTGGCACTCGCACCAACAGAGCTACAAAGGCAGGATTCTGGAAAGCTACTGGAAGGGACAAATCAATTTACACAAAACATTGTCTGGTTGGCATGAGAAAAACTCTGGTGTTTTACAAAGGAAGAGCCCCCAATGGACAGAAATCTGACTGGATCATGCATGAATACCGCCTAGAAACCAACGAAAATGGGAGTACTCCTCAGGAAGAAGGCTGGGCTGTATGCAAAGTTTTCAAGAAAAGAATGCCAACAACAATACGGAAAATGGGTGACTACGGGTCACCCTGTTGGTATGATGACCAAGTCTCATTCATGCAAGAGCTTGAATCTCCAAACCAAGTTTCTTCTCACCATTATGCTTCATACCAGCAGCAGCAGCACTACCCCTGCAAGCAGGAGTTGGAGATGCAATACAATGTAACCAGGACCCATGACGCTTTCCTCCAACTCCCGCAGCTCGAAAGCCCCAAACTTCTTCAATCTTATGGCTATGATCATGGCAATAATAACAATGGAAGTATTTTGCAGTCCTCATCATCATCACTCCCTCAACAAGAAGAACACATACAGCATGGCCAGCATCAAAGTCTCCAACACTTGCTTTATGGTAGCAATAATGATCAAGTGACAGATTGGCGAGTACTTGACAAATTTGTTGCTTCTCAGCTCAGTCACGAACAACATGCTTCCAAGGATGAAACCAGTTATTCCAATGTGGCTGAAGATCAAGAGCAATTTACTTTGCTACCAAATGGATCTGAGAAACCTGAAATTAACCAGAAATATGCTTCAACGACAACCTCTAGTTGCCAAATTGACCCGTGGAAGTGA 1062 0.4228 MNTFSHVPPGFRFHPTDEELVDHYLRKKVASKRIELDVIKDVDLYKIEPWDLQELCKLGTDEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKSIYTKHCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGSTPQEEGWAVCKVFKKRMPTTIRKMGDYGSPCWYDDQVSFMQELESPNQVSSHHYASYQQQQHYPCKQELEMQYNVTRTHDAFLQLPQLESPKLLQSYGYDHGNNNNGSILQSSSSSLPQQEEHIQHGQHQSLQHLLYGSNNDQVTDWRVLDKFVASQLSHEQHASKDETSYSNVAEDQEQFTLLPNGSEKPEINQKYASTTTSSCQIDPWK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0080 353 MobiDBLite consensus disorder prediction 238 272 - -
Lja2g0080 353 MobiDBLite consensus disorder prediction 239 272 - -
Lja2g0080 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 322 - -
Lja2g0080 353 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Lja2g0080 353 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lja2g0080 353 MobiDBLite consensus disorder prediction 303 353 - -
Lja2g0080 353 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Lja2g0080 353 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Lja2g0080 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 322 - -
Lja2g0080 353 MobiDBLite consensus disorder prediction 316 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0080 Lja-Chr2 612602 613854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0080 1 350 NAC Transcription Factor Family AT1G62700 58.040 1.16e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g0080 NAM 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0080 - - pvy:116105603 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0080 2 612602 613854 Lja2g0080 2 612602 613854 ECH
Lja2g0080 2 612602 613854 Lja4g2515 4 31072483 31075878 PCT