Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0078 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCAGCATTCTCCTCCGGCGACTTCACCGCCGCCATCCGCCACTTCTCCGATGCCATAGCCCTCGCCCCGGAAAATCACGTCCTGTACTCCAACCGATCCGCCTCCTACGCCTCCCTCAAAAACTACACCGAGGCGTTATCCGACGCCAAGAAGACCGTCGAACTCAAACCCGATTGGTCCAAGGGCTACAGCCGCCTCGGCGCCGCTCATCTCGGCCTCTCCCAATTCGACGACGCCGTTTCCGCCTACTCCAAAGGCCTCGAAATCGACCCCAATAATGAACCCCTCAAATCAGGTCTCGCCGATGCACAGGCGGCGGCTGCGGCGGCGGCTTCCAGGTCCTCCCGCTCGGCGAATCCCTTCGGTGACGCTTTCTCCGGCCCTGAGATGTGGGCTAAGCTCACCGCGGACGCTACCACCAGGGGTTACCTTCAACAACCTGATTTTGTGAAGATGATGCAGGATATTCAGAAGGACCCCAACAATCTCAACTTGTATTTGAAGGATCCGAGGGTCATGCAAGCGTTTGGGGTTTTGCTCAACGTGAAGCTTCGTGCCCCTGAGGATTCTGATTTGCCTGATTCCCCTCCGGCTTCGTCGTCGGAGAGGAAGAGAGCTGCTGAAGCTGAGCCTGTGAGTCAACCTGAGCCAGAACCTGAGGCTATGGAGGTGGCGGATGAGGAGAGTGAAGCGAAGCAGAGGAAGGTTGAGGCTCAGAAGGAGAAGGAGGCGGGTAATGCTGCGTACAAGAAGAAGCAATTTGATACTGCGATTCAGCATTACTCTAAGGCTTTGGAGCTGGATGATGAGGATATATCGTTTCTCACCAACCGTGCTGCTGTTTACTTGGAAATGGGGAAGTATGAGGATTGCATTAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTTAGAGCAGACTACAAGATGGTAGCAAGAGCTTTGACAAGGAAAGGGACTGCCTTGGTCAAAATGGCAAAATGCTCGGCAGATTTTGATCCTGCTATTGAGACCTTCCAAAAAGCTCTGACAGAGCACCGCAACCCAGATACCTTGAAGAAACTTAATGAGGCTCAGAAGGCTAAGAAAGATCTAGAACAAAAAGAATACTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGGAATGAGTTCTTTAAGCAGCAGAAGTATCCTGAAGCTGTGGGGCATTACACAGAGTCTATAAGAAGAAATCCGAACGACCCTAGGGCTTATAGTAACAGGGCTGCATGTTACACTAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTCGATCCAACCTTCGTCAAGGGTTATACCAGGAAAGGAGCGGTTCAATATTTCATGAAAGATCATGAAAAGGCTTTGGAAACATATAGGGAGGGGTTGAAACTAGACCCGAACAACCAGGAGTTGCTTGATGGCATTGGAAAATGTATGCAACAAATCAATAAGGCTAGCCGTGGAGATTTAACTCCTGAAGAATTGAAGGAGAGACAGGCCAAGGGAATGCAGGACCCAGAGATACAGAATATCCTGCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCTAAGGCTGCGCAGGATCATGCAAAGAATCCAATGGTGATGAGCAAGATCCAAAAACTGATCAGTGCTGGAATTGTGCAGATGAAATAA 1731 0.4997 MADEAKAKGNAAFSSGDFTAAIRHFSDAIALAPENHVLYSNRSASYASLKNYTEALSDAKKTVELKPDWSKGYSRLGAAHLGLSQFDDAVSAYSKGLEIDPNNEPLKSGLADAQAAAAAAASRSSRSANPFGDAFSGPEMWAKLTADATTRGYLQQPDFVKMMQDIQKDPNNLNLYLKDPRVMQAFGVLLNVKLRAPEDSDLPDSPPASSSERKRAAEAEPVSQPEPEPEAMEVADEESEAKQRKVEAQKEKEAGNAAYKKKQFDTAIQHYSKALELDDEDISFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRADYKMVARALTRKGTALVKMAKCSADFDPAIETFQKALTEHRNPDTLKKLNEAQKAKKDLEQKEYFDPKLADEEREKGNEFFKQQKYPEAVGHYTESIRRNPNDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKDHEKALETYREGLKLDPNNQELLDGIGKCMQQINKASRGDLTPEELKERQAKGMQDPEIQNILQDPVMRQVLVDFQENPKAAQDHAKNPMVMSKIQKLISAGIVQMK* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0078 576 Coils Coil 231 252 - -
Lja2g0078 576 Coils Coil 359 379 - -
Lja2g0078 576 Pfam STI1 domain 517 568 IPR041243 -
Lja2g0078 576 Pfam STI1 domain 138 191 IPR041243 -
Lja2g0078 576 Gene3D Tetratricopeptide repeat domain 245 381 IPR011990 GO:0005515
Lja2g0078 576 PANTHER TPR REPEAT CONTAINING PROTEIN 1 575 IPR045248 GO:0006457|GO:0030544|GO:0051879
Lja2g0078 576 Pfam Tetratricopeptide repeat 456 488 IPR001440 GO:0005515
Lja2g0078 576 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Lja2g0078 576 Gene3D - 505 576 - -
Lja2g0078 576 MobiDBLite consensus disorder prediction 236 257 - -
Lja2g0078 576 SMART tpr_5 248 281 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 421 454 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 455 488 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 387 420 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 36 69 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 282 315 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 2 35 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 323 360 IPR019734 GO:0005515
Lja2g0078 576 SMART tpr_5 70 103 IPR019734 GO:0005515
Lja2g0078 576 Pfam Tetratricopeptide repeat 7 64 - -
Lja2g0078 576 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Lja2g0078 576 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lja2g0078 576 MobiDBLite consensus disorder prediction 197 257 - -
Lja2g0078 576 Pfam TPR repeat 255 296 - -
Lja2g0078 576 Pfam TPR repeat 394 435 - -
Lja2g0078 576 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lja2g0078 576 SMART CBM 525 564 IPR006636 -
Lja2g0078 576 SMART CBM 147 186 IPR006636 -
Lja2g0078 576 SUPERFAMILY TPR-like 8 501 IPR011990 GO:0005515
Lja2g0078 576 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lja2g0078 576 ProSiteProfiles TPR repeat profile. 421 454 IPR019734 GO:0005515
Lja2g0078 576 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Lja2g0078 576 Gene3D Tetratricopeptide repeat domain 385 500 IPR011990 GO:0005515
Lja2g0078 576 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 575 - -
Lja2g0078 576 Gene3D - 128 194 - -
Lja2g0078 576 ProSiteProfiles TPR repeat profile. 455 488 IPR019734 GO:0005515
Lja2g0078 576 ProSiteProfiles TPR repeat profile. 387 420 IPR019734 GO:0005515
Lja2g0078 576 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0078 386 462 U-box Gene Family AT3G07370 33.766 2.28e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0078 K09553 - gmx:100816776 967.222