Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0071 ATGAATTCTCTCCATCTCCTCCTTTTTCTGTTTCTATTTTTTGCATTTGTCAGTCCTCAGACAGTTCTTGGAAATGCAGAGCTCAGAGCTCTGATGGACTTGAAATCCTCTATGGATCCTGAAGGCAAGATCCTTAGCTCGTGGATCAGTGATGGTGATCCGTGCGGTGGCTTGTTTGAAGGGATTGCGTGCAACGAGCACCGGAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCAGGTTGGCTCTCTCCAGCTGTGGCTGAGCTTAGATGCTTGACAGGGTTATACTTGCACTACAACAATCTTTCTGGGGAGATACCTCCACACATTTCAAATCTCACTGATCTGGTTGATCTCTATCTTGATGTCAATAGTCTATCTGGAACCATTCCTACTGAAGTCGGTAACATGGTTAGTCTCCAAGTACTCCAGTTGGGTGATAACCAGTTGGTGGGGAATATACCTACACAGATGGGTTCCTTGAAGCAGCTCAGTACACTTGCTTTGCAATATAACAAGTTGAGTGGTCAAATTCCTCTTGGCTTGGGGAACTTGGAGAAGCTAAGCAGGCTAAATTTGAGCTTCAACAACTTCAGTGGAGCGATTCCCGCAACACTAGCCCATGTTGCACACTTAGAAGTTCTAGATATTCAAAACAATTCTCTCTCAGGAATTGTTCCTTCTGCATTGAAGAGACTTGGAGAAGGATTCCAAGGAGTAAACAACCCAGGTTTATGTGGAGATGGGTTTTCTACTTTGGGAGCTTGCAACAAAGATCAGGATTTGAACGTTAACCATATTGATGCATCAGGCCAAGACCAAGCCAAAAACAGTAATCCTACAAAGACTCTTCCAGAGCCTGCACATATTAAGTTGCACTGTAACCAGACCCATTGCTCAAAATCAAGAAGGTTTTCTCAAACTGTCTTCACAGCGAGTGCCATAGCTATCATTCTTACAATCATAGGTGCTGGAATTTATACATATGTTAGATACCGCCGCCAAAAGCAAAGGATTGCTTCAAATTCTTCTGAAGGGAAACTTAGTCCTGAGCAGCCTAAAGAGTTATACAAAAAAAGTCCATCTGCACTTGTTAATCTTGAGTATTGCAATGGATGGTATCCAATGCCTGATGGCCAAGATGCTGGTGGAGAATCCAATGAATATCTTAATGAATATAGGTTTAATGTTGATGAGGTTGAATCTGCGACACAGTACCTTTCTGAAGCCAATTTGTTGAGTAAAAGCAAATTCTCAGCAGTTTATAAAGGAGTTATGAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAATGTGACATGCTGCAAAACAGAGGAGGCTGAATTTGTGAAGGGGTTGAGCTTAGTAACCTCACTGAGGCATGAAAACCTTGTCAGGCTCAGAGGTTTCTGTTGCTCAAAGGGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACTTGTCTCAATATCTTGACATAGAAGATGGAAGTGGCCATCTTCTTGACTGGTCGCAGAGGGTTTCTATCATCAAAGGCATTGCAAAGGGTATTGGATATCTGCACAGTAATGAAGCGAGCAAACCTACAATAGTACACCAAAATATTTCAGTGGAAAATGTTCACCTTGACCATCAATTTACCCCATTGATCATGGATGCTGGACTGCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTTTGAAAGTAAGCGCTGCCATGGGATACCTCGCTCCGGAATACATCACTACTGGACGCTTTACTGAGAAGAGTGACATATATGCATTTGGTGTTATTGTTCTTCAAGTTCTATCTGGCAAGACGGCAATAGGTGGTTCAATACGCATAGCGTTTGAGTCCTCAAGATTTGATGATTCTATTGACACAAATCTTAGGGAAAGGTATTCAAAATCTGAAGCAGCGGCGCTTTCAAAGCTTGGAGTGCAATGTATCCATGAGGTCCCTGACCAAAGACCAACCATGGTGGATGTGATTCAGGAGCTGAGCGTGTTGCCTACTCACTCATAA 2046 0.4286 MNSLHLLLFLFLFFAFVSPQTVLGNAELRALMDLKSSMDPEGKILSSWISDGDPCGGLFEGIACNEHRKVANISLQGKGLSGWLSPAVAELRCLTGLYLHYNNLSGEIPPHISNLTDLVDLYLDVNSLSGTIPTEVGNMVSLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLSGQIPLGLGNLEKLSRLNLSFNNFSGAIPATLAHVAHLEVLDIQNNSLSGIVPSALKRLGEGFQGVNNPGLCGDGFSTLGACNKDQDLNVNHIDASGQDQAKNSNPTKTLPEPAHIKLHCNQTHCSKSRRFSQTVFTASAIAIILTIIGAGIYTYVRYRRQKQRIASNSSEGKLSPEQPKELYKKSPSALVNLEYCNGWYPMPDGQDAGGESNEYLNEYRFNVDEVESATQYLSEANLLSKSKFSAVYKGVMRDGSLVAIRSINVTCCKTEEAEFVKGLSLVTSLRHENLVRLRGFCCSKGRGECFLIYDFATMGNLSQYLDIEDGSGHLLDWSQRVSIIKGIAKGIGYLHSNEASKPTIVHQNISVENVHLDHQFTPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRIAFESSRFDDSIDTNLRERYSKSEAAALSKLGVQCIHEVPDQRPTMVDVIQELSVLPTHS* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0071 681 ProSiteProfiles Protein kinase domain profile. 409 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0071 681 SUPERFAMILY L domain-like 27 234 - -
Lja2g0071 681 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Lja2g0071 681 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 4 677 - -
Lja2g0071 681 SUPERFAMILY Protein kinase-like (PK-like) 388 676 IPR011009 -
Lja2g0071 681 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 677 - -
Lja2g0071 681 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Lja2g0071 681 SMART LRR_typ_2 139 163 IPR003591 -
Lja2g0071 681 SMART LRR_typ_2 211 234 IPR003591 -
Lja2g0071 681 SMART LRR_typ_2 91 115 IPR003591 -
Lja2g0071 681 SMART LRR_typ_2 187 210 IPR003591 -
Lja2g0071 681 Pfam Leucine rich repeat 189 235 IPR001611 GO:0005515
Lja2g0071 681 Gene3D Phosphorylase Kinase; domain 1 385 487 - -
Lja2g0071 681 Gene3D Transferase(Phosphotransferase) domain 1 489 677 - -
Lja2g0071 681 Pfam Protein tyrosine and serine/threonine kinase 413 674 IPR001245 GO:0004672|GO:0006468
Lja2g0071 681 Gene3D Ribonuclease Inhibitor 180 244 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0071 Lja-Chr2 535079 538203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0071 6 522 Miscellaneous Gene Families AT4G22730 55.218 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lja2g0071 PK_Tyr_Ser-Thr 7.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0071 - - gmx:100777169 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0071 2 535079 538203 Lja2g0071 2 535079 538203 ECH