Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0062 ATGAGGACTCGTTATCATAGAACTGATTCTGTTCACTATTTCCATTTTGACAGTGTACGGGCTGAAGACTCATCTATGCTTACTCCACATCTCATCACCATCAATTCTGGAGAGGATGTTTTTAGGGAGATAATGGTATTCTCTCAGCAAACTCCGCGAGATATATGCATTCTCTCTGCAGTGGGACACATATCAACTGTCACCCTTAACCAGCCTGGTTCTTCTGCTAGGACAGTAACCCATGAGGGACAGTTTAGGATTCTATCATTATCAGGCCATTTCTGTCCACATGAAAGTGGTGGGGAAACACTTGGCCGTTCTGGCAACATGAGCATTGTTTTTGCAAGTCCAGATGGACGTGTTGCAGGTGGTACATTAGCTGGTATGTTGGTGGCTGCAACTCCCGTGCAGGTGATTGTAGGCAGTTTTGTGCCATATGAGATAAGATCAAGACCAACTGCAGCTGTTCCTGTGTCTGCTATTCCAATGTCTAATCTCCGTTGA 504 0.4504 MRTRYHRTDSVHYFHFDSVRAEDSSMLTPHLITINSGEDVFREIMVFSQQTPRDICILSAVGHISTVTLNQPGSSARTVTHEGQFRILSLSGHFCPHESGGETLGRSGNMSIVFASPDGRVAGGTLAGMLVAATPVQVIVGSFVPYEIRSRPTAAVPVSAIPMSNLR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0062 167 ProSiteProfiles PPC domain profile profile. 23 164 IPR005175 -
Lja2g0062 167 CDD DUF296 28 143 IPR005175 -
Lja2g0062 167 SUPERFAMILY AF0104/ALDC/Ptd012-like 25 154 - -
Lja2g0062 167 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 147 IPR039605 GO:0003680
Lja2g0062 167 Pfam Plants and Prokaryotes Conserved (PCC) domain 29 144 IPR005175 -
Lja2g0062 167 Gene3D - 29 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0062 Lja-Chr2 492537 494852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0062 2 160 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.299 1.24e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0062 - - lja:Lj2g3v2002670.1 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0062 2 492537 494852 Lja2g0062 2 492537 494852 ECH