Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0061 ATGTTCACAAACCGCTTCTCTCCCCACTGCACCAGTGACGGCGCTCTGACTCAGTTTGACAAGGCTCCTCCACCGGAGATGAACCACTCTTCTCAAAGTGAACGGGCTGCAGGCTCATTTATGTTTACTCCCCATATCATCAACATCAATTCTGGAGAGGATGTTTTTAGGAAGATAATGTTATTCTGTCAGCAAAGTCCGCGAGCTATATGCATTCACTCCGCAGAGGGACGCATATCAACTGTCACCATTTCCCATGTTGATTCTTCTGCTACAGTAACATACGAGGTGAAGCATTTATGA 303 0.462 MFTNRFSPHCTSDGALTQFDKAPPPEMNHSSQSERAAGSFMFTPHIININSGEDVFRKIMLFCQQSPRAICIHSAEGRISTVTISHVDSSATVTYEVKHL* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0061 100 MobiDBLite consensus disorder prediction 1 35 - -
Lja2g0061 100 CDD DUF296 43 96 IPR005175 -
Lja2g0061 100 Gene3D - 44 99 - -
Lja2g0061 100 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 24 96 IPR039605 GO:0003680
Lja2g0061 100 SUPERFAMILY AF0104/ALDC/Ptd012-like 41 96 - -
Lja2g0061 100 ProSiteProfiles PPC domain profile profile. 38 100 IPR005175 -
Lja2g0061 100 Pfam Plants and Prokaryotes Conserved (PCC) domain 44 90 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0061 Lja-Chr2 488100 488948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0061 42 96 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.714 2.37e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0061 - - lja:Lj2g3v2002670.1 75.0997