Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0056 ATGGATCCATTATCAGCACACGGCCACTCTCTTCCTCCTCCTTTTCTCCATCTGCACCACCAACACCAACACCAGCAGCAGCATCAGCAGCATCAGTTCCACTCTTTACAGCAGCAGCAAACCCCAGCAGAAGATGAACAGAGTGGAAGCAGCGGCGGCATCAAAAGGGAACGCGATGAAAACAACAACAGCCATGACGGCAAAGAAGGCTCCGGAGGCGGAGGCGAAAGCGAGAATTCAAGAAGACCTCGAGGAAGGCCCGCCGGATCGAAGAACAAGCCTAAGCCGCCCATCATCATCACCCGCGACAGCGCCAACGCACTTAAGACCCACGTCATGGAGGTCGCCGACGGCTGCGACATCGTCGACAGCGTCTCCAACTTTGCAAGACGCCGCCAGCGCGGCGTCTGCATCATGAGCGGCACTGGAACCGTCACCAACGTCACTCTCAGGCAGCCAGCTTCTTCCGGCGCTGTTGTCACCCTCCACGGAAGGTTTGAGATTCTCTCCCTGGCAGGATCGTTCCTGCCGCCGCCTGCTCCACCGGCAGCATCAGGTTTGACCATTTACTTGGCTGGTGGACAAGGGCAGGTTGTTGGAGGAAGTGTTGTGGGAGCTCTCATTGCTTCGGGACCTGTGGTTATCATGGCAGCTTCGTTCAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGACCCTTCATTGGCAATGCAAGGAGGTTCAATGGGTTCACCACCCGGTGGTAGTGGTGGTGGTGGTGGAGTTGGTCAGCAACAGCAGCAACAGCTTTTAGGGGATGCAACTGCCCCACTTTTTCATGGTTTGCCTCCGAATCTTCTCAATTCTGTTCAGATGCCAAACTCCGATAACTTCTGGCCATCTGGCCGCTCTCCTTACTGA 906 0.5585 MDPLSAHGHSLPPPFLHLHHQHQHQQQHQQHQFHSLQQQQTPAEDEQSGSSGGIKRERDENNNSHDGKEGSGGGGESENSRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMAASFSNAAYERLPLEDEDPSLAMQGGSMGSPPGGSGGGGGVGQQQQQQLLGDATAPLFHGLPPNLLNSVQMPNSDNFWPSGRSPY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0056 301 MobiDBLite consensus disorder prediction 282 301 - -
Lja2g0056 301 MobiDBLite consensus disorder prediction 1 99 - -
Lja2g0056 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Lja2g0056 301 CDD DUF296 109 176 IPR005175 -
Lja2g0056 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 301 - -
Lja2g0056 301 ProSiteProfiles PPC domain profile profile. 105 241 IPR005175 -
Lja2g0056 301 PIRSF ESCAROLA 15 300 IPR014476 GO:0003680
Lja2g0056 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 235 - -
Lja2g0056 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 301 IPR014476 GO:0003680
Lja2g0056 301 MobiDBLite consensus disorder prediction 50 66 - -
Lja2g0056 301 Gene3D - 108 238 - -
Lja2g0056 301 MobiDBLite consensus disorder prediction 234 301 - -
Lja2g0056 301 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0056 Lja-Chr2 441769 443713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0056 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 59.077 1.21e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0056 - - gmx:100781436 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0056 2 441769 443713 Lja2g0056 2 441769 443713 ECH