Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0047 ATGAGACTGCACTGCAAAATCCATCTCTCTCATGCTCTATTCTGCGCCATTCTCTGTTTCATTTCCTCTGTGTTCATGGTCTCACCAGCAACAGAGAAGGAGATTTTGCTCCAATTCAAGGGAAATGTCACAGAAGATCCACACAACAGTTTGACTTCGTGGGTTTCTAGTGGAGACCCTTGCCAGAATTTCAATGGTGTTACCTGTGACTCTGAAGGGTTTGTGGAGAGAATTGTTCTTTGGAACACTAGCTTAGGTGGGGTGTTGTCCCCTGCTCTATCAGGGTTGAAGAGGTTGAGGATTTTGACATTGTTCGGGAATCGGTTTTCGGGTAGTATTCCAGGAGAATTTGCTGATCTTCAGTCATTGTGGAAGATCAATTTCAGCTCCAATGCGTTATCTGGTTCGATCCCTGAGTTCATAGGTGATTTGCCTAACATTCGGTTTCTAGATTTGTCAAAAAATGGCTTTGTTGGGGTGATACCTTTGGCTTTGTTTAAGTACTGCTACAAAACCAGGTTTGTTTCTCTTTCTCATAACAATCTTGCTGGTCCAATTCCTGTGTCCTTGGTGAATTGCTCCAACCTTGAAGGGTTTGATTTTTCATTCAACAATCTCAGTGGGGTTGTCCCTTCAGGAATTTGTGGCATTCCAAGGTTATCATATGTGTCTCTGAGAAGCAATGGCTTATCAGGGAGTGTGCAAGAGCAGATTTCAGCATGCAAAAGTCTCATGCTGTTGGATTTTGGTAGTAATAGATTCTCTGATTTGGCCCCATTTGGCATCCTTGGAATGCAAAATCTTACCTACTTCAATGTATCTTACAATGGGTTTAGAGGACAGATTCCTGAGATCACTTCATGTAGTGAGAGATTGGAAATCTTTGATGCTTCAGGGAATGATTTGGATGGGGAGATTCCCTCCAGCATAACTAGATGCAAGAACTTGAAGCTCTTGGACTTGGAGTTGAATAGGCTGAAAGGGACTATCCCAGTTAATATTCAGGAATTGAGAGGGCTGTTGGTTATCAAATTGGGGAATAATTCTATCAGTGGAATGATTCCCAAGGGTTTTGGCAACATTGAGCTGCTTGAATTGCTGGCTTTGCAGAATCTAAACCTCAATGGAGAAATTCCAGTTGATATAAGCAATTGCAAGTTTCTTCTTGAGCTGAATGTTTCTGGTAATAACTTGGAGGGTGAGATTCCTCAGACCCTTTACAAAATGACAAATATGAAAGCTCTTGACCTACATCATAACCAGCTATATGGAAGCATTCCACCAAGCCTAGGAAACCTATCAAGGATCCAATACCTAGATCTGTCACATAATTCACTGTCTGATTCAATTCCTCTTTCCCTTGGAAAATTAGAAAAATTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTGATGTTGCTAACATACAGCGTTTTGATGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTCCTCCTTTGGACACCCCTTGCTCAGCAAACGGAACTGTACCACCGTCAGCTCCTGGCAAGAAGACTAAAGTTCTCAGTGTCTCTGCTATTGTTGCAATTGTTGCTGCAGCTGTAATTCTTACTGGGGTTTGCTTGGTGACCATCATGAATATTAAGGCTCGACACAGGAAAAAAGATGATGACCAGATTATGATTGCTGAGAGCACACCTCTTGGGTCAACAGAATCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGCTTACCATCAAAATATGAAGATTGGGAGGCGGGTACCAAAGCATTGCTTGACAAGGAGTCTCTGATAGGTGGGGGATCAATTGGTACAGTCTACAAAACTGATTTTGAAGGTGGCGTCTCAATTGCAGTGAAGAAGCTCGAGAGTTTGGGAAGGATTAGAAATCAGGAGGAATTCGAACATGAAATCGGGCGGCTAGGAAATCTTCAACACCCTAATTTGGTTGCTTTCCAAGGTTACTACTGGTCCTCTTCAATGCAATTGATTCTATCAGAGTTTGTCCCAAATGGGAACCTCTATGATAATCTGCATGGGTTTGGCTATCCTGGAACAAGCACTAGCAGAGGTAATAGGAAATTACATTGGTCTCATAGATTCCAAATTGCACTTGGAACTGCTAGAGCCCTTGCCTATCTCCATCATGATTGTCGACCTCCGATTCTTCATCTCAACATTAAATCCTCTAACATACTTTTGGATGACAAGTATGAACCTAAGTTGTCTGATTATGGATTGGGAAAGTTGCTTCCCATTTTGGATAATTATGGTCTGACCAAGTTTCACAATGTTGTTGGATATGTTGCACCTGAGTTGGCTCAGAGCATGAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTCGGGGTCATTCTTTTGGAGCTGGTTACAGGGAGAAAGCCAGTTGAAAGTCCAACCTCAAATGAGGTGGTGGTTTTGTGTGAATATGTAAGAGGTTTGTTGGAGACTGGCTCAGCTTCAAATTGCTTTGACAGAAATTTAGTAGGCTTTGCTGAGAATGAATTGATTCAGGTTATGAAATTGGGGCTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTGGAATCCCATTAA 2670 0.4191 MRLHCKIHLSHALFCAILCFISSVFMVSPATEKEILLQFKGNVTEDPHNSLTSWVSSGDPCQNFNGVTCDSEGFVERIVLWNTSLGGVLSPALSGLKRLRILTLFGNRFSGSIPGEFADLQSLWKINFSSNALSGSIPEFIGDLPNIRFLDLSKNGFVGVIPLALFKYCYKTRFVSLSHNNLAGPIPVSLVNCSNLEGFDFSFNNLSGVVPSGICGIPRLSYVSLRSNGLSGSVQEQISACKSLMLLDFGSNRFSDLAPFGILGMQNLTYFNVSYNGFRGQIPEITSCSERLEIFDASGNDLDGEIPSSITRCKNLKLLDLELNRLKGTIPVNIQELRGLLVIKLGNNSISGMIPKGFGNIELLELLALQNLNLNGEIPVDISNCKFLLELNVSGNNLEGEIPQTLYKMTNMKALDLHHNQLYGSIPPSLGNLSRIQYLDLSHNSLSDSIPLSLGKLEKLTHFDLSFNNLSGVIPDVANIQRFDASAFSNNPFLCGPPLDTPCSANGTVPPSAPGKKTKVLSVSAIVAIVAAAVILTGVCLVTIMNIKARHRKKDDDQIMIAESTPLGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGGVSIAVKKLESLGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGFGYPGTSTSRGNRKLHWSHRFQIALGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEPKLSDYGLGKLLPILDNYGLTKFHNVVGYVAPELAQSMRQSEKCDVYSFGVILLELVTGRKPVESPTSNEVVVLCEYVRGLLETGSASNCFDRNLVGFAENELIQVMKLGLICTSEDPLRRPSMAEVVQVLESIRNGLESH* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0047 889 Pfam Leucine Rich Repeat 436 457 IPR001611 GO:0005515
Lja2g0047 889 Pfam Protein kinase domain 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0047 889 Pfam Leucine rich repeat 98 156 IPR001611 GO:0005515
Lja2g0047 889 CDD STKc_IRAK 607 882 - -
Lja2g0047 889 PANTHER UNNAMED PRODUCT 9 888 - -
Lja2g0047 889 SUPERFAMILY L domain-like 51 197 - -
Lja2g0047 889 SUPERFAMILY L domain-like 166 499 - -
Lja2g0047 889 Gene3D Ribonuclease Inhibitor 172 506 IPR032675 -
Lja2g0047 889 SMART LRR_typ_2 337 360 IPR003591 -
Lja2g0047 889 SMART LRR_typ_2 144 168 IPR003591 -
Lja2g0047 889 SMART LRR_typ_2 96 119 IPR003591 -
Lja2g0047 889 SMART LRR_typ_2 409 433 IPR003591 -
Lja2g0047 889 SMART LRR_typ_2 457 479 IPR003591 -
Lja2g0047 889 Gene3D Ribonuclease Inhibitor 29 171 IPR032675 -
Lja2g0047 889 Gene3D Phosphorylase Kinase; domain 1 601 681 - -
Lja2g0047 889 SUPERFAMILY Protein kinase-like (PK-like) 602 880 IPR011009 -
Lja2g0047 889 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lja2g0047 889 Gene3D Transferase(Phosphotransferase) domain 1 682 888 - -
Lja2g0047 889 PANTHER - 9 888 - -
Lja2g0047 889 ProSiteProfiles Protein kinase domain profile. 601 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0047 Lja-Chr2 375359 378636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0047 13 888 Receptor kinase-like Gene Family AT1G62950 64.859 0.0 1115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Lja2g0047 Pkinase 2.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0047 - - mtr:MTR_5g011410 1482.62