Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0031 ATGCAAGAACCCAACCTCGGAATGATGGGCGGTGGTTTCACCGGTGATGTTTCAGCTTCCGGCGACCACCACCACCGCCAACTCAAGGCTGAAATCGCCACTCACCCTCTCTACGAACAGCTTCTCGCAGCACACGTCGCGTGTCTCCGAGTCGCCACTCCGATCGACCAGCTTCCACTAATTGATGCGCAGTTATCTCAATCTCACCATCTTCTCCGCTCGATTGTCTCTCAACACACTCACTCTCTTCCTCCGCATGATCGCCAAGAACTTGATAACTTCCTGGCACAGTATTTGATTGTTCTGTGTACCTTCAAAGATCAGCTTCAGCAGCATGTCAGAGTTCATGCCGTCGAGGCTGTCATGGCTTGCCGTGATATTGAAAACACCTTGCAGGCTCTCACAGGAGTCAGTTTGGGAGAAGGAACTGGTGCCACAATGTCAGATGATGAAGATGATTTGCAGATGGATTTTTCTTTAGATCAATCTAGCACTGAAGGGCATGACATGATGGGATTTGGTCCCTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTTAAATCCAGAATTGAAGATGTAAGGGAGGAAATATTAAGGAAAAGAAGAGCTGGGAAATTACCTGGTGACACAACTACAGTTTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACAGAAGATGACAAGGCAAAACTTGTGGAGGAGACGGGTTTGCAGCTGAAGCAGATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTTTGAAGTCCAAACGCAAGAGAATGTAG 873 0.4696 MQEPNLGMMGGGFTGDVSASGDHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSIVSQHTHSLPPHDRQELDNFLAQYLIVLCTFKDQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSTEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRM* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0031 290 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 289 - -
Lja2g0031 290 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Lja2g0031 290 Pfam KNOX2 domain 85 135 IPR005541 GO:0003677|GO:0005634
Lja2g0031 290 SUPERFAMILY Homeodomain-like 214 279 IPR009057 -
Lja2g0031 290 CDD homeodomain 215 276 IPR001356 GO:0003677
Lja2g0031 290 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Lja2g0031 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 289 - -
Lja2g0031 290 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Lja2g0031 290 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Lja2g0031 290 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Lja2g0031 290 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Lja2g0031 290 SMART HOX_1 214 279 IPR001356 GO:0003677
Lja2g0031 290 Gene3D - 211 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0031 Lja-Chr2 276503 281872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0031 1 288 Homeobox Transcription Factor Family AT1G62990 80.479 3.71e-172 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja2g0031 KNOX2 9.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0031 - - qsu:111989291 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0031 2 276503 281872 Lja2g0031 2 276503 281872 ECH