Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0024 ATGTGTCTGAAAACATTCAATGAATTGGTGAACCGTCTTGGCAACAAGTGGTCCAAGATTGCTTCCAAGTTACCAGGAAGAACAGACAATGAGATTAAGAATCACTGGAACACCGACATCAAGAAGAAACTCCTTAAGATTGGTATTGACCCAATTACACATGAACCACTCACTAAACAAGCTGCATCCAAGGACAGTTCAATTTCAACCCCTGCAGAGCCATTTCCACCACAACCTCAGATCAAGGAAACTGAAGGGGAGAATTCTAACTCATCATCCCCAGATGAAAGCTCTTCTGGAGAAGAATCACTTTTGCTGGATAGCATTTGCAGTGATGACTCACTAATTAATAGCTTGTGGCCAGATGAAACTCCATTGGTGGAAGCATTATGGGACACTACTGAACCTATAGCATTAGCACATGATAATACTAAAATTGACATGGGTTTGATTCCATCTTGGGAGGATAATTGTGCTTGGCTATTTGACTGTGAGGACTATGGACAAATCAAGTGGGGAATTGAAGGGGTTCTCAACAACTCAGAGGAGAATTCTAACTCATCATCCCCAGATGAACGTTCTTCTGGAGAAGAATCACTTTTGCTGGATAACATTTGCAGTGATGACTCACTAATCAATAGCTTATGGCTAGATGAAAACTCCATTGGTGGAAACTACTGA 681 0.4126 MCLKTFNELVNRLGNKWSKIASKLPGRTDNEIKNHWNTDIKKKLLKIGIDPITHEPLTKQAASKDSSISTPAEPFPPQPQIKETEGENSNSSSPDESSSGEESLLLDSICSDDSLINSLWPDETPLVEALWDTTEPIALAHDNTKIDMGLIPSWEDNCAWLFDCEDYGQIKWGIEGVLNNSEENSNSSSPDERSSGEESLLLDNICSDDSLINSLWLDENSIGGNY* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0024 226 MobiDBLite consensus disorder prediction 82 103 - -
Lja2g0024 226 PANTHER PROTEIN ODORANT1 8 164 - -
Lja2g0024 226 PANTHER PROTEIN ODORANT1 177 219 - -
Lja2g0024 226 Pfam Myb-like DNA-binding domain 5 38 IPR001005 -
Lja2g0024 226 ProSiteProfiles Myb-like domain profile. 8 40 IPR001005 -
Lja2g0024 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 164 - -
Lja2g0024 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 177 219 - -
Lja2g0024 226 MobiDBLite consensus disorder prediction 58 103 - -
Lja2g0024 226 CDD SANT 8 38 IPR001005 -
Lja2g0024 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 44 IPR017930 -
Lja2g0024 226 SUPERFAMILY Homeodomain-like 5 51 IPR009057 -
Lja2g0024 226 Gene3D - 4 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0024 Lja-Chr2 205711 207434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0024 8 174 MYB Transcription Factor Family AT4G22680 42.246 2.59e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja2g0024 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0024 K09422 - gmx:100786965 203.371