Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0021 ATGAGCCTTTTCAATTCAACATTCGACGAGTTCAACTACGGCTACCAGTCGCCAGAAACAAGCTCCTACACCACCACCACCACCCGCAGCGAAGAGGAAGTGGTATTGGCATCGGCGCGGCCAAAGAAGCGAGCTGGGCGGCGAGTATTCAAGGAGACCAGGCACCCTGTATATAGAGGAGTGCGGCAGAGAAACTCCAACAAGTGGGTTTGCGAGATGCGAGTTCCTAACGACACTAAGAGGATCTGGCTCGGGACATTCCCGACACCCGAAATGGCGGCGAGGGCGCACGACGTCGCCGCGCTTGCTCTCCGAGGGCAATCAGCTTGCCTTAATTTTGCCGACTCCGCGTGGCTGCTCACGGTGCCGGCGTCAACCGATGCGGATGAGATAAGGAGGGCTGCGGTGGCGGCGGCTGAGTCATTCGCGCCTGGGAATGAGGTGATGGAAGATGCGAATCAAACTCTACAGCAGCAGCAACAAGAACAAGAACAGGGGATGATGTACGGGGAAGAAGAGGTTGCGGCGGCGGTGCCGGAATTTGAAGACTTTCATGATTTGCTTATGAGCATTGCGAATGGTCCATTGCTGTCTCCTCCACCTCCTGCAAGAGATGGTAGGGACTGGAATGACGTGGAGATGTTTGATGATGGAGTGTCACTGTGGAACTTTTGA 675 0.5526 MSLFNSTFDEFNYGYQSPETSSYTTTTTRSEEEVVLASARPKKRAGRRVFKETRHPVYRGVRQRNSNKWVCEMRVPNDTKRIWLGTFPTPEMAARAHDVAALALRGQSACLNFADSAWLLTVPASTDADEIRRAAVAAAESFAPGNEVMEDANQTLQQQQQEQEQGMMYGEEEVAAAVPEFEDFHDLLMSIANGPLLSPPPPARDGRDWNDVEMFDDGVSLWNF* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0021 224 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Lja2g0021 224 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Lja2g0021 224 Coils Coil 146 166 - -
Lja2g0021 224 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Lja2g0021 224 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Lja2g0021 224 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lja2g0021 224 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lja2g0021 224 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Lja2g0021 224 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Lja2g0021 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 224 - -
Lja2g0021 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 224 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0021 Lja-Chr2 189110 190269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0021 32 224 AP2-EREBP Transcription Factor Family AT1G12610 49.510 3.00e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g0021 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0021 - - lja:Lj2g3v2016210.1 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0021 2 189110 190269 Lja2g0021 2 189110 190269 ECH