Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0020 ATGGCTTCATCAACATCTTCTAAGAGGCACCCGGTGTACCATGGAATCCGTTGCCGCGGAGGGAAATGGGTGTCCGAGATTCGTGAGCCGCGAAAGGCGTCGCGAATATGGCTGGGAACGTTCCCCACGGCGGAGATGGCGGCGGCTGCCTATGATGTGGCGGCGTTGGCATTGAAAGGTCACGACAATGCTGTTCTCAACCTCCCTGGCCTGATGGGAATGTATCAGATGCCTGTGACTAACTCTCCTGCTGACATCCGCAGCGCCGCCACCGCGGCAGCGGAACTTATGAAGAATGGTGGCGTTGAAGAAGAAGAAGAAGAAGGTTCCGGCCACGATGTATCGATGAATGTGATGAGTGAGGCTGCTGCTGGTTCAAGTTCGTTATGGTTTGAGAGTGATTTCATGGATGAGGAAGCGATATTCAGGATGCCGAGCTTGCTGGTGGACATGGCTGGCGGAATGCTTCTGTCACCGCCCAGAATGAGCCCACAACACTCGCCGGAGAGGCAAGCTGGAGAAACTCTGTGGAGCTATTTTTGA 543 0.547 MASSTSSKRHPVYHGIRCRGGKWVSEIREPRKASRIWLGTFPTAEMAAAAYDVAALALKGHDNAVLNLPGLMGMYQMPVTNSPADIRSAATAAAELMKNGGVEEEEEEGSGHDVSMNVMSEAAAGSSSLWFESDFMDEEAIFRMPSLLVDMAGGMLLSPPRMSPQHSPERQAGETLWSYF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0020 180 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Lja2g0020 180 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Lja2g0020 180 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Lja2g0020 180 PANTHER ETHYLENE RESPONSE FACTOR 1 180 - -
Lja2g0020 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 180 - -
Lja2g0020 180 SUPERFAMILY DNA-binding domain 12 68 IPR016177 GO:0003677
Lja2g0020 180 MobiDBLite consensus disorder prediction 159 180 - -
Lja2g0020 180 Pfam AP2 domain 11 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0020 Lja-Chr2 179418 180003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0020 7 179 AP2-EREBP Transcription Factor Family AT5G52020 53.723 2.83e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja2g0020 AP2 3.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0020 - - gmx:100811020 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0020 2 179418 180003 Lja2g0020 2 179418 180003 ECH