Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0012 ATGGGCGGCGACGGGAGACAGAACAGTAGCATCGCCTGCCAAGTTCTGGCGGATCGGTGCCGGAGCCTGGAGGAGCAACAAACCAAACTCAGGGACCAGTTCGATGAGCTGCTACTGCACCAGAACAACAACAAACCCAACTTCACTGCCAGGGATCACGCCGATTCAAGTTCAACCACCGCCAGTTTCCTTTCCGGTTTCTTCTTCTCTCAAACTCCCTACGCTAGCGTGCTCAAATGCATGGGCCACGCCGTTCATGTCTACAGTGTTTCCTCCGGCGAGATCGTATACTGGAATCACTCTGCGGAAACTCTGTATGGATGGAAAGACTACGAAATCATTGGAAAAAGAGTAACTAAGTTCCTAATTACTGAGGAATATTATGCACCTTTACAAAAAATTCTAGAAAGGTTAATCACCACTGGAGAGACATGGTCTGGGAAGTTTCCTTACAAGAAAAAGTGTGGTGAAGTCTTTATGGTAATGGTAACAAAGGCTCCTCTTTACGAGGATGGTGTGCTTGTTGGTGTTATCTCTGTTTCAAGTGAAGCAGCTAAATTTAACACTATAGATTCTGAATTTCAAAGAACTTGCCAATCTGGTGCCAGTGGCCAACCTGGAGTTCAGAAGTTAAACTCAAAAGGGAATCAATGGCCTCTGCGGCCGTTGATTGCACCAATGCCACAGATTGCATCATCTGTTTCCAATCTGGCATCAAAAATTCTTCCAAACCGGCATATGGATGATACAGTTTCCAGGAATACTTCAACAGATGCAAATGATGAAAAACTAGAGAAGTGCAGCATATATGAAACGAAACTTCATTCCAGACATCACCATAAGGAGCAAAATGCAACTATCCGAGAGGCCTCTGAGAAAGATGAGTCTACTACTGAATTCGGCCGAGCATCTAAAATTGCAGCTAGATTCATGGCTAAGCTTCAAATTGGAGGAACTGGAAAATGGGGGAAGGATACTCAAAGTGTTAAAACTAATTGCAGAGTTGATAATCCAGAAAGTGATGGAGTGAATAATGGAAATCATTCATCTGGAGGTTCCGCGGCATTAACTTCACACCAGGATGTTGCTAATGGAGTTGATAGAGAAGAAAATCTCCATAAATGTGATTCTTTATTTTCTATGAAGACAGCACATACAAACGTTTATGCACGTAGAACTTCCGGTGTTTTCGAAGTTAGTTCTGCTAAACCTTTCTCAAGGGAATGTTATGAATGTCTTGGTTCTCTTGTTCCCCAAGACCCGTTGTTAAGATTACACCGTCAATTTGATCCTAAGAAATTGGAGCCAGAAGCTACACATATGGCGATAGAAGATGAAGTGCAAAAGCAGCAAGGCAGATTGCAATTACCAAGTTCTAGGGAGAGTGTAGGTAGTCATGAGAGTTCATCGAGCAAAGGGGATAATGATTCTGTTGTAGACTGTGAAATCCATTGGGAAGACCTTCACTTAAGAGATGAAATTGGACAAGGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCCATCAAGGTTTACTTCGGGAATGGATACACAGAGGAGACTTTACAAGACTACAAAAAAGAGATTGATATAATGAAGAGATTGAGACATCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACTAGAAAGGCTTGCCATTGTGACAGAGCTGTTACCTAGGGGAAGTCTTTTCAAAACTCTTCACAAGAGCAATCAGACATTAGACATCAGAAGGCGTCTAAGGATGGCTCTTGATATTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCGCCAATTGTGCATAGAGACCTAAAGTCATCTAACCTGCTTGTTGATAAAAACTGGACTGTCAAGGTTGGAGACTTTGGCCTGTCAAGGTTGAAGGACACAACTTTATTGACTACCAAATCTGGGAGAGGCACACCACAGTGGATGGCACCTGAAATCCTTCGCAATGAACCGTCAAATGAGAAGTCGGATGTGTATAGTTACGGTGTCGTTCTCTGGGAACTTATGACTCAATCTATTCCTTGGGAAAATTTGAATTCCTTACAGGTTGTTGGAGTAGTGGGCTTTATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGACCCCCATGTAGCATCAATCATCAATGATTGCTGGCGAAGCGATCCTGAACAACGCCCATCATTTGAAGAGCTAATACAGAGAATGCTGTTCGTTCTGAACAGAGTAACAGCAGAGTCAGTTAAGAGAAGTTCAGAAACTTGTAATGCGGTTCACGTCCCTTAA 2298 0.4282 MGGDGRQNSSIACQVLADRCRSLEEQQTKLRDQFDELLLHQNNNKPNFTARDHADSSSTTASFLSGFFFSQTPYASVLKCMGHAVHVYSVSSGEIVYWNHSAETLYGWKDYEIIGKRVTKFLITEEYYAPLQKILERLITTGETWSGKFPYKKKCGEVFMVMVTKAPLYEDGVLVGVISVSSEAAKFNTIDSEFQRTCQSGASGQPGVQKLNSKGNQWPLRPLIAPMPQIASSVSNLASKILPNRHMDDTVSRNTSTDANDEKLEKCSIYETKLHSRHHHKEQNATIREASEKDESTTEFGRASKIAARFMAKLQIGGTGKWGKDTQSVKTNCRVDNPESDGVNNGNHSSGGSAALTSHQDVANGVDREENLHKCDSLFSMKTAHTNVYARRTSGVFEVSSAKPFSRECYECLGSLVPQDPLLRLHRQFDPKKLEPEATHMAIEDEVQKQQGRLQLPSSRESVGSHESSSSKGDNDSVVDCEIHWEDLHLRDEIGQGSYAVVYHGIWNGSDVAIKVYFGNGYTEETLQDYKKEIDIMKRLRHPNVLLFMGAVYSLERLAIVTELLPRGSLFKTLHKSNQTLDIRRRLRMALDIARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDTTLLTTKSGRGTPQWMAPEILRNEPSNEKSDVYSYGVVLWELMTQSIPWENLNSLQVVGVVGFMDRRLDLPEGLDPHVASIINDCWRSDPEQRPSFEELIQRMLFVLNRVTAESVKRSSETCNAVHVP* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0012 765 Gene3D PAS domain 87 186 - -
Lja2g0012 765 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 15 745 - -
Lja2g0012 765 PANTHER SERINE-THREONINE PROTEIN KINASE 15 745 - -
Lja2g0012 765 CDD STKc_MAP3K-like 494 740 - -
Lja2g0012 765 MobiDBLite consensus disorder prediction 447 477 - -
Lja2g0012 765 SMART serkin_6 488 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0012 765 MobiDBLite consensus disorder prediction 336 356 - -
Lja2g0012 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Lja2g0012 765 Gene3D Phosphorylase Kinase; domain 1 481 565 - -
Lja2g0012 765 Gene3D Transferase(Phosphotransferase) domain 1 567 751 - -
Lja2g0012 765 TIGRFAM sensory_box: PAS domain S-box protein 90 179 IPR000014 -
Lja2g0012 765 MobiDBLite consensus disorder prediction 451 476 - -
Lja2g0012 765 Coils Coil 13 33 - -
Lja2g0012 765 SUPERFAMILY Protein kinase-like (PK-like) 479 748 IPR011009 -
Lja2g0012 765 SMART pas_2 72 140 IPR000014 -
Lja2g0012 765 Pfam PAS domain 91 180 IPR000014 -
Lja2g0012 765 ProSitePatterns Protein kinases ATP-binding region signature. 494 515 IPR017441 GO:0005524
Lja2g0012 765 ProSiteProfiles Protein kinase domain profile. 488 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0012 765 CDD PAS 93 181 IPR000014 -
Lja2g0012 765 MobiDBLite consensus disorder prediction 275 298 - -
Lja2g0012 765 ProSiteProfiles PAS repeat profile. 92 142 IPR000014 -
Lja2g0012 765 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 180 IPR035965 -
Lja2g0012 765 PRINTS Tyrosine kinase catalytic domain signature 601 619 IPR001245 GO:0004672|GO:0006468
Lja2g0012 765 PRINTS Tyrosine kinase catalytic domain signature 648 658 IPR001245 GO:0004672|GO:0006468
Lja2g0012 765 PRINTS Tyrosine kinase catalytic domain signature 667 689 IPR001245 GO:0004672|GO:0006468
Lja2g0012 765 PRINTS Tyrosine kinase catalytic domain signature 562 575 IPR001245 GO:0004672|GO:0006468
Lja2g0012 765 PRINTS Tyrosine kinase catalytic domain signature 711 733 IPR001245 GO:0004672|GO:0006468
Lja2g0012 765 Pfam Protein tyrosine and serine/threonine kinase 488 739 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0012 Lja-Chr2 96227 103359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0012 5 746 MAP Kinase Kinase Kinase AT4G23050 43.577 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja2g0012 PK_Tyr_Ser-Thr 7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0012 - - gmx:100813707 1092.41