Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0011 ATGGGGAAGGCTTCAAAGTGGTTTCGCGGTCTTCTCGGTATGAGAACACCAGACTCATCATCACCATCTCCAAATAAACCACCCAAAGAGAAACGCCGATGGAGCCTCGTCAAGTCCTACAGAGAAAAAGACAACCACCCCGTAACAGCACCCGTCCAAGGCGGCAACAAACACGTCTTAGCTGAGCTGGCTCTCGCAACCGCCACCGCTTCCATGGCAGAAGCCACCAGACTCACCGGAACCGCCGCTTCCGGAGTCACTCCTCGCGAAGAGTGGGCAGCCGTTAAGATTCAAGCCGCGTTTCGAGGCTGTTTGGCAAGGAAGGCACTGCGAGCGTTGAAAGGATTGGTGAAGCTACAGGCATTGGTGAGAGGTCACATTGAGAGGAAGCGCACGAAAGAGTGGGTGCAAAGAGTGCAAGCACTCTTACGTGCACAGACCCGAGCCCGCACTGCTCGGGGCCAAATTCTAGATCAGGCCTCGTTTCATATAGCAAAGTCATTCACAGGCCCCCTCCATGGTCCAGTAACACCTGAGAAATTTGAAAGCCCGATCAGTTCCGAGAGTGTGAAATACAGTCAGTCACCTGCACTCAAGAGAAACATCTCCAAATCATGTGGCCGAATCAATGGCAATCAAGAGAAATGCGGCGGGACTAGATCAGATAATCGGGTAGATGAACAATCATGGACTCACCGTAAGTCATGGATGAGAACTTGTAGCATGGATGATGAAACAAGTTTCAGGATTCTTGACATAGATTCCGGAAAACCGCACATCAGATCTAAACGGAGAAACCTCTTCTATTCCGCCAGCCAAGCTTTGCTTCCCGATCATTACAGTCAGAACTTGACCACCACAACAAAGGACTCAACATCTTCTTGTGAAGTTGGTTCTCGCAGCAGCCCCCTGAAAATGAATGAGGTTGAAGAGAACTCATTATCCGTGGCCTCTTCGTACCAAGACGGTAGCTTGAAAAAAAGTCCTTTAATTACTCCTACCAAGAGTGATGGCTCAAGAAGTAATCTAAGTGGCTATACTGCTGATTCCTATCCAAGTTACATGGCTTACACTGAGTCTTCAAAGGCTAAGTTAAGATCTCTTAGTGCTCCAAAACAAAGAGCACCGCGATATGAGAGGTCTAGTTCATCTAAATTGGCCACACAAAGGATAGCTGCATTGCGCGCAAGCTTCACTAGCAAAGACTATCCTGGTTCTGGTCGTTTAGACAAGCTTGGTTTGCCTGTTGGTTATAGTTTCTGA 1263 0.4854 MGKASKWFRGLLGMRTPDSSSPSPNKPPKEKRRWSLVKSYREKDNHPVTAPVQGGNKHVLAELALATATASMAEATRLTGTAASGVTPREEWAAVKIQAAFRGCLARKALRALKGLVKLQALVRGHIERKRTKEWVQRVQALLRAQTRARTARGQILDQASFHIAKSFTGPLHGPVTPEKFESPISSESVKYSQSPALKRNISKSCGRINGNQEKCGGTRSDNRVDEQSWTHRKSWMRTCSMDDETSFRILDIDSGKPHIRSKRRNLFYSASQALLPDHYSQNLTTTTKDSTSSCEVGSRSSPLKMNEVEENSLSVASSYQDGSLKKSPLITPTKSDGSRSNLSGYTADSYPSYMAYTESSKAKLRSLSAPKQRAPRYERSSSSKLATQRIAALRASFTSKDYPGSGRLDKLGLPVGYSF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0011 420 Pfam Protein of unknown function (DUF4005) 319 402 IPR025064 -
Lja2g0011 420 PANTHER CALMODULIN BINDING PROTEIN IQD22 1 415 - -
Lja2g0011 420 PANTHER IQ-DOMAIN 5-RELATED 1 415 - -
Lja2g0011 420 SMART iq_5 112 133 IPR000048 GO:0005515
Lja2g0011 420 SMART iq_5 89 111 IPR000048 GO:0005515
Lja2g0011 420 MobiDBLite consensus disorder prediction 283 345 - -
Lja2g0011 420 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Lja2g0011 420 MobiDBLite consensus disorder prediction 365 386 - -
Lja2g0011 420 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Lja2g0011 420 Pfam IQ calmodulin-binding motif 117 132 IPR000048 GO:0005515
Lja2g0011 420 MobiDBLite consensus disorder prediction 1 33 - -
Lja2g0011 420 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Lja2g0011 420 Gene3D - 87 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0011 Lja-Chr2 89239 93288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0011 1 49 IQD Protein Family AT4G23060 46.429 2.09e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0011 - - gmx:100814244 424.476