Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0009 ATGGCCAGTGCCACGCCGACGCGTTCCTCCGAAGACATCCTCAACACGGCGCCGCTGCTATCAAATTCCGCCGGCTCCTCCGCCGAAATCAACTCCGACCGTCGATTCGCTCGGAGGCAGAGGCTCATGCAAGCGGCGCGGTTCATCCGCCAGGCGAGTGGCCAGGGAATGATGCGCGAGCCCTCGGTGATGGTTCGCGAGGCCGCAGCGGAGCAGTTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTTGTCATACTCGACCTCGTTTGGAACTTCGCCTTCGTCGTGGCTTCCACCGCCGTGTGTGTTCTCAGCCGAACTGAAGCGCCGGATATGCCTCTGAGGCTGTGGATTGCGGGTTATGCTTTGCAATGCGTTATTCATATGGTTTGTGTCTGTGTCGAGTTTAGGAGGCGGAGGCGGAACCTACACAACGGGGTGCCTGGGGTTAGCACCAGCAGTGCGAATTTGAGTTCTGCTTCAAGGGTGGGTTCTCGTTCTGCTTCTGGCTATGTATCGTTTGCGCAATTCGATGAAGAGCGTACTAGTGTTGCAAAACATTTGGAATCAGCCAATACCATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCCGCTGGTGGTCAAGATTTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTAGTCTTTGTTGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCCGTCTGCTGTTGTCTTCCATGTATCATTGCAATTCTTTATGCAGTTGCAGACCAGGAAGGGGCATCCAAGGAAGACATTGAGCAGTTGTCAAGATTTAAATTCCGAAGAATTGAAAGTAATGAGAAACCTACTGGCAATGCTCAAGGACCTGGTGGAGGAATAATGACCGAATGCCTGGCTGATTCACCAATTGAACATGTTCTTGCCGAGGAGGATGCGGAATGTTGTATCTGCCTTTCTTCTTATGATGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGGCTGTGTGGATAAATGGCTGCATATTAATGCTACGTGCCCCCTCTGCAAGTATAACATCTTGAAGAGTAGCAACGTCGGTGAAGAGGAAGTGTGA 1149 0.5048 MASATPTRSSEDILNTAPLLSNSAGSSAEINSDRRFARRQRLMQAARFIRQASGQGMMREPSVMVREAAAEQLEERQSDWAYSKPVVILDLVWNFAFVVASTAVCVLSRTEAPDMPLRLWIAGYALQCVIHMVCVCVEFRRRRRNLHNGVPGVSTSSANLSSASRVGSRSASGYVSFAQFDEERTSVAKHLESANTMFSFIWWIIGFYWVSAGGQDLAQDSPQLYWLCIIFLGFDVVFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIEQLSRFKFRRIESNEKPTGNAQGPGGGIMTECLADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNILKSSNVGEEEV* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0009 382 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 382 - -
Lja2g0009 382 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Lja2g0009 382 Pfam Ring finger domain 326 368 IPR001841 -
Lja2g0009 382 CDD RING-H2_RNF111_like 326 370 - -
Lja2g0009 382 SUPERFAMILY RING/U-box 317 374 - -
Lja2g0009 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 376 IPR013083 -
Lja2g0009 382 PANTHER TARGET OF ERK KINASE MPK-1 5 382 - -
Lja2g0009 382 SMART ring_2 327 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0009 Lja-Chr2 76900 81112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0009 21 375 C3H Transcription Factor Family AT1G68070 48.045 7.19e-115 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0009 - - gmx:100790497 594.734